| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_0285 |
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| Symbol | |
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| ID | 1168167 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | + |
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| Start bp | 291567 |
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| End bp | 293621 |
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| Gene Length | 2055 bp |
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| Protein Length | 684 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 637342294 |
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| Product | type IV pilus biogenesis protein PilQ |
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| Protein accession | NP_715925 |
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| Protein GI | 24371883 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4796] Type II secretory pathway, component HofQ |
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| TIGRFAM ID | [TIGR02515] type IV pilus secretin (or competence protein) PilQ |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAATCTT CTGCCGCGAT AAAAATCCCG TTATCGTTTT TAACTTCAGG CTTAGTTAAG
TCTGTTATTG GGATCGCATT ACTATTTGGA TTTTTGCCAT CGAGCTTTGC GGAAAATCGG
CTCATCGATG TGAAATACCA TGCCTTAGTC GACCATCAAT TAGCGGTTGA GTTGGTATTT
GAGGACGCAA TTTCTGCCCC AAAAATTGAC TCTAATGCTT CACCCGCCGA GTTGGTGTTG
ACCTTTGATA ACAGTATTTC GGGTCTTTCT AAAGATCGCT TACCGATTAA TCAAGTCGGG
GTGAAGGATA TTGTAACTTC GCAGCATGAT GCCCGTTTGA AAGTCACTTT AGGTTTATCC
AAAGTAAAAC CTTACCAAGG TAGCGTAGTC GGTAACTCCT ACCGTTTGAC GATTAATGAT
GGCGTTGCAA GTTCTCAAGC GAGCAATAAT CCTTTCGTGA ATAGTGTTAA AAATATCGAT
TTTCGTCGCA ATTCAAATGG CGGTGGAGAT TTATTAGTCT ATCTCAATAA TCGCTCCGTT
GCGGCTAACG TTGAGCAAAT TGGTGCCAAA CTTGAGGTTC AGCTTTATAA CACTGATATC
AATAACGACT TGTTATATGT CATGGATGTG CAGGATTTTT CTACACCAGT TAAGAACTTT
GAAACTTTTA AAGATGATTT AACGGCTCGC ATTTTAGTCG ATGTGACTGG CAACTATGAG
TTCAATTTTA AGCAGGAAGA TAATCTCTTT ATCCTTTCTA TTAACAAGGT TGAACGGGTT
GTAGCTACTA AAGACATTAA GAAGTATAAC GGTAAAACTC TTTCTTTAAA CTTCCAGAAT
ATTTCTGTTC GTACGGTATT ACAGATTATT GCTGACTATA ACAACTTTAA CTTAGTGACC
AGTGATTCCG TCGAGGGAGA TATTACTCTC AGACTTGACG ATGTGCCTTG GGATCAAGCG
TTGGATTTAA TTTTACAAAC AAAAGGACTC GATAAGCGCA TTGAAGGGAA CATTTTGATG
GTGGCCCCGA GTGAAGAGCT TGCGATTCGT GAAAGCCAAA ACCTTAAAAA TAAACAAGAG
GTTAAAGAGC TGGCGCCACT TTATTCTGAG TACCTACAGA TTAACTATGC CAAGGCGACC
GATATTGCTG AGCTGTTAAA AGGCGCCGAC TCAAGCTTAT TGTCTCCCCG TGGTTCAGTG
GCCGTTGACG AGCGCACCAA CACAGTTCTC GTAAAAGATA CCGCTGAAAT TATAGAGAAT
ATTCATCGTT TGGTGGAAGT GCTTGATATT CCTATTCGGC AGGTATTGAT TGAATCACGT
ATGGTTACCG TAAAAGACGA CGTTTCTGAA GATCTGGGTA TCCGTTGGGG CGTTACTGAT
CAGCAGGGTA ATAAAGGGAC CTCTGGCTCT TTAGAGGGCG CGGGTGATAT TGCTAATGGC
AAAGTTCCGA GTTTAGATAA TCGCTTGAAT GTGAATTTAC CTGCGGCCGT GACTAACCCT
ACAAGCATTG CTTTCCATGT TGCTAAGCTC GCCGATGGTA CTATCTTGGA TCTAGAGCTC
AGTGCACTAG AGCAAGAAAA CAAAGGTGAA ATTATCGCTA GCCCTCGTAT CACTACCTCT
AACCAAAAAG CGGCGTATAT TGAACAGGGG GTGGAAATTC CCTATGTGCA ATCTACATCC
AGCGGTGCAA CGTCGGTAAC CTTTAAAAAG GCGGTATTAT CATTAAGGGT TACGCCACAA
ATTACACCGG ATAACCGTGT GATTTTGGAT CTTGAGATTA CGCAAGATTC CCAGGGTAAA
ACCGTGGATA CGCCTACGGG GCCGGCGGTT GCGATTGATA CACAACGCAT TGGTACGCAA
GTTCTGGTCG ATAATGGCGA GACCATTGTG CTGGGGGGGA TTTACCAGCA GAATTTGATC
AGCCGTGTCA GTAAAGTACC TATTCTTGGT GATATTCCTT TGGTAGGTTT CTTATTCCGT
AACACCACGG ATAAGAATGA GCGCCAAGAG TTGTTAATTT TCGTGACTCC AAAAATCGTG
AACGAGAAAC TCTAA
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| Protein sequence | MKSSAAIKIP LSFLTSGLVK SVIGIALLFG FLPSSFAENR LIDVKYHALV DHQLAVELVF
EDAISAPKID SNASPAELVL TFDNSISGLS KDRLPINQVG VKDIVTSQHD ARLKVTLGLS
KVKPYQGSVV GNSYRLTIND GVASSQASNN PFVNSVKNID FRRNSNGGGD LLVYLNNRSV
AANVEQIGAK LEVQLYNTDI NNDLLYVMDV QDFSTPVKNF ETFKDDLTAR ILVDVTGNYE
FNFKQEDNLF ILSINKVERV VATKDIKKYN GKTLSLNFQN ISVRTVLQII ADYNNFNLVT
SDSVEGDITL RLDDVPWDQA LDLILQTKGL DKRIEGNILM VAPSEELAIR ESQNLKNKQE
VKELAPLYSE YLQINYAKAT DIAELLKGAD SSLLSPRGSV AVDERTNTVL VKDTAEIIEN
IHRLVEVLDI PIRQVLIESR MVTVKDDVSE DLGIRWGVTD QQGNKGTSGS LEGAGDIANG
KVPSLDNRLN VNLPAAVTNP TSIAFHVAKL ADGTILDLEL SALEQENKGE IIASPRITTS
NQKAAYIEQG VEIPYVQSTS SGATSVTFKK AVLSLRVTPQ ITPDNRVILD LEITQDSQGK
TVDTPTGPAV AIDTQRIGTQ VLVDNGETIV LGGIYQQNLI SRVSKVPILG DIPLVGFLFR
NTTDKNERQE LLIFVTPKIV NEKL
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