Gene SO_0255 details

Gene Information

• Locus tag: SO_0255
• Symbol: rpsD
• ID: 1168138
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella oneidensis MR-1
• Kingdom: Bacteria
• Replicon accession: NC_004347
• Strand: +
• Start bp: 257118
• End bp: 257738
• Gene Length: 621 bp
• Protein Length: 206 aa
• Translation table: 11
• GC content: 45%
• IMG OID: 637342262
• Product: 30S ribosomal protein S4
• Protein accession: NP_715895
• Protein GI: 24371853
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0522] Ribosomal protein S4 and related proteins
• TIGRFAM ID: [TIGR01017] ribosomal protein S4, bacterial/organelle type

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCAAGAT ACTTGGGTCC CAAGCTCAAG CTCAGCCGCC GAGAAGGTAC TGACCTTTTC 
TTAAAAAGCG GTGTGAGAGC AATCGATTCT AAGTGTAAAC TGGAATCTGC ACCAGGACAG 
CATGGCGCTC GTAAGCCACG TCTGTCAGAG TACGGTTTAC AGTTACGCGA AAAACAAAAA 
GTTCGTCGTA TTTACGGTGT GTTAGAAAAA CAATTCCGTA ACTACTACAA AGAGGCTGCA 
CGTCTAAAAG GTAACACTGG TGAAAACCTG TTACAACTTT TAGAAACTCG TTTAGATAAC 
GTTGTTTATC GTATGGGTTT TGGTGCGACT CGTGCAGAAT CACGTCAGCT AGTAAGCCAT 
AAATCAGTTA TGGTTAACGG TCGTGTTGTT AACATTCCGT CATTCAAAGT GTCTGCGAAT 
GATGTTGTAA GCATCCGTGA AAAGTCACGC ACTCAAGCTC GTATCAAAGC GGCTTTAGAA 
GTGGCTGCTC AACGCGAGAA GCCTACATGG GTTGAAGTCG ACAGCGCGAA AATGGAAGGT 
GCTTTCAAGC GTATTCCAGA ACGTAGCGAT TTGTCTGCGG AAATTAACGA ACAGCTGATC 
GTCGAGCTTT ACTCTAAGTA A 

 

Protein sequence

MARYLGPKLK LSRREGTDLF LKSGVRAIDS KCKLESAPGQ HGARKPRLSE YGLQLREKQK 
VRRIYGVLEK QFRNYYKEAA RLKGNTGENL LQLLETRLDN VVYRMGFGAT RAESRQLVSH 
KSVMVNGRVV NIPSFKVSAN DVVSIREKSR TQARIKAALE VAAQREKPTW VEVDSAKMEG 
AFKRIPERSD LSAEINEQLI VELYSK