Gene SO_0246 details

Gene Information

• Locus tag: SO_0246
• Symbol: rplF
• ID: 1168129
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella oneidensis MR-1
• Kingdom: Bacteria
• Replicon accession: NC_004347
• Strand: +
• Start bp: 252688
• End bp: 253221
• Gene Length: 534 bp
• Protein Length: 177 aa
• Translation table: 11
• GC content: 49%
• IMG OID: 637342253
• Product: 50S ribosomal protein L6
• Protein accession: NP_715886
• Protein GI: 24371844
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0097] Ribosomal protein L6P/L9E
• TIGRFAM ID: [TIGR03654] ribosomal protein L6, bacterial type

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCTCGTG TAGCAAAAGC ACCAGTATCT ATTCCAGCTG GCGTAGAGGT GACCTTAAAC 
GAACAGACCC TGACCGTCAA AGGCGCGAAA GGAAGTCTGA CTCGAGTGAT CAACAATGCG 
GTCAATGTTG TTATTGAAAA TGGCGTGATT AAATTCCTTC CTGTTGAGGG CGCTGTTGGC 
GCTTGGGCAC AGGCTGGTAC AACACGTGCA TTAGTAAACA ACATGGTTGT TGGTGTATCT 
CAAGGTTTTG AGCGTAAATT AAAGTTAGTT GGCGTTGGTT ACCGTGCGAA ACTCGTCGGT 
GCTGACATTG ACCTGACTTT AGGTTTCTCT CATCCGTTAG TACACAAACT GCCCGCAGGC 
GTTACTGCAG AGTGCCCTAG CCAAACTGAC ATCGTCCTAC GTGGCGTTGA TAAACAGTTA 
ATTGGCCAAG TCGCTGCTGA GATTCGCGGA TACCGTCCAC CAGAGCCATA CAAAGGCAAG 
GGTGTTCGCT ATGACGACGA AGAAGTACGC CGTAAAGAGG CTAAGAAGAA GTAG 

 

Protein sequence

MSRVAKAPVS IPAGVEVTLN EQTLTVKGAK GSLTRVINNA VNVVIENGVI KFLPVEGAVG 
AWAQAGTTRA LVNNMVVGVS QGFERKLKLV GVGYRAKLVG ADIDLTLGFS HPLVHKLPAG 
VTAECPSQTD IVLRGVDKQL IGQVAAEIRG YRPPEPYKGK GVRYDDEEVR RKEAKKK