Gene SO_0217 details

Gene Information

• Locus tag: SO_0217
• Symbol: tufB
• ID: 1168100
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella oneidensis MR-1
• Kingdom: Bacteria
• Replicon accession: NC_004347
• Strand: +
• Start bp: 227280
• End bp: 228464
• Gene Length: 1185 bp
• Protein Length: 394 aa
• Translation table: 11
• GC content: 48%
• IMG OID: 637342224
• Product: elongation factor Tu
• Protein accession: NP_715857
• Protein GI: 24371815
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0050] GTPases - translation elongation factors
• TIGRFAM ID: [TIGR00231] small GTP-binding protein domain; [TIGR00485] translation elongation factor TU

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCTAAAG CTAAATTTGA ACGTTCTAAG CCCCATGTAA ACGTGGGCAC CATCGGTCAC 
GTTGACCATG GTAAAACCAC TCTGACTGCA GCTATCTCTC ACGTACTGGC TAAGACCTAC 
GGTGGTGAAG CTAAAGACTT CTCTCAAATC GATAACGCTC CAGAAGAGCG TGAGCGCGGT 
ATTACCATCA ATACCTCTCA CATCGAATAT GACACGCCTT CACGCCACTA CGCACACGTA 
GACTGCCCAG GCCACGCTGA CTATGTTAAA AACATGATCA CTGGTGCTGC ACAGATGGAC 
GGCGCGATAT TAGTAGTTGC TTCTACAGAC GGTCCAATGC CACAAACGCG TGAGCACATC 
CTGCTGTCTC GCCAAGTAGG CGTACCATTC ATCATCGTAT TCATGAACAA ATGTGACATG 
GTTGACGATG CTGAGCTGTT AGAATTAGTC GAAATGGAAG TACGTGAACT GTTATCAGAA 
TACGACTTCC CAGGTGATGA CTTACCCGTA ATCCAAGGTT CAGCTCTGAA AGCGCTAGAA 
GGCGAGCCAG AGTGGGAAGC GAAGATCCTT GAGCTGGCAG CAGCTTTAGA CTCTTACATT 
CCAGAACCAG AGCGTGATAT CGATAAGCCA TTCCTGATGC CAATCGAAGA CGTATTCTCA 
ATCTCTGGCC GTGGTACAGT AGTAACTGGT CGTGTTGAGC GTGGTATCGT ACGTGTTGGT 
GACGAAGTAG AAATCGTTGG TATCCGTACT ACAACTAAGA CCACCTGTAC TGGTGTTGAA 
ATGTTCCGTA AACTGCTTGA CGAAGGTCGT GCAGGTGAGA ACTGTGGTAT TTTATTACGT 
GGTACTAAGC GTGATGATGT AGAACGTGGC CAAGTATTAT CTAAGCCAGG TTCAATCAAC 
CCACACACCA CTTTTGAATC AGAAGTCTAC GTACTGTCAA AAGAAGAAGG TGGTCGTCAC 
ACGCCATTCT TCAAAGGCTA CCGTCCACAG TTCTACTTCC GTACAACTGA CGTAACCGGT 
ACTATCGAAC TGCCAGAAGG CGTAGAGATG GTAATGCCAG GCGACAACAT CAAGATGAAA 
GTGACTCTGA TCTGCCCAAT CGCGATGGAC GAAGGTTTAC GCTTCGCAAT CCGTGAAGGT 
GGCCGTACAG TAGGCGCTGG TGTTGTAGCG AAGATTTTCG CTTAA 

 

Protein sequence

MAKAKFERSK PHVNVGTIGH VDHGKTTLTA AISHVLAKTY GGEAKDFSQI DNAPEERERG 
ITINTSHIEY DTPSRHYAHV DCPGHADYVK NMITGAAQMD GAILVVASTD GPMPQTREHI 
LLSRQVGVPF IIVFMNKCDM VDDAELLELV EMEVRELLSE YDFPGDDLPV IQGSALKALE 
GEPEWEAKIL ELAAALDSYI PEPERDIDKP FLMPIEDVFS ISGRGTVVTG RVERGIVRVG 
DEVEIVGIRT TTKTTCTGVE MFRKLLDEGR AGENCGILLR GTKRDDVERG QVLSKPGSIN 
PHTTFESEVY VLSKEEGGRH TPFFKGYRPQ FYFRTTDVTG TIELPEGVEM VMPGDNIKMK 
VTLICPIAMD EGLRFAIREG GRTVGAGVVA KIFA