| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_0172 |
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| Symbol | gspJ |
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| ID | 1168059 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | + |
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| Start bp | 178623 |
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| End bp | 179390 |
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| Gene Length | 768 bp |
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| Protein Length | 255 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637342175 |
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| Product | general secretion pathway protein J |
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| Protein accession | NP_715814 |
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| Protein GI | 24371772 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4795] Type II secretory pathway, component PulJ |
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| TIGRFAM ID | [TIGR01711] general secretion pathway protein J
[TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGTCCTCAA AACGAACTAA TGCTCACCGA GGGTTTACCC TGCTCGAAAT GCTGATCGCA
ATTGCGATTT TTGCCATGTT GGGGTTAGCG GCCAATGCGG TATTAAGCAC GGTACTGACC
AACGATGAAG TGACAAAAAA CTTCTCGACC CGATTAAAGG CGTTACAGCA GGGCTTTGGT
GCGATTGAGC GCGATTTAGG ACAGATGGTT GCCCGTACCC CCAGATTACT TGAAGGTGGG
CGTGGAACAA CAGTGTTCCA AACGGGTAAT GACATTTTAG ATTCGGAATC CGAGGCTTTG
GTGTTTTATC GCCTAGGCTG GCTTAACCCT GACGGTTTAT TGCCCCGTGG TAGTTTGCAG
TCAGTGGCCT ACGTGGTGCG TGAGGGAAAA TTAGAGCGCT GGTATTTTCC TTACCCTGAG
CCAGAATTTG GCGCAGAGCC AATTAAGACG GTGATTATCG ACAAGGTGCT GTCAGTCGAA
TATTCCTTCT TTATGGAAGA TAAGTGGGAG CGAAAGGTCG AGGCAACTAA GTTACCTAAA
GCCATTGCGA TGGAAATTGA GATTGAAGGT TTAGGCAAAA TCCAGCGTAA GTTTATGTTG
CCTCTGGGCG CAGCGGCGCC AGAAAAATCT AAGGAAGAAG GCAACAAAGA CGAGAACACT
GAAGATAATA AAGAAGACAA CGGCGATTCG GACAATAACG GGGATGGTTC AGGCAACGGG
GAAGAAGATC CCGGCAAAGG TGACCCAGAA AATGAGGATG GCGCATGA
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| Protein sequence | MSSKRTNAHR GFTLLEMLIA IAIFAMLGLA ANAVLSTVLT NDEVTKNFST RLKALQQGFG
AIERDLGQMV ARTPRLLEGG RGTTVFQTGN DILDSESEAL VFYRLGWLNP DGLLPRGSLQ
SVAYVVREGK LERWYFPYPE PEFGAEPIKT VIIDKVLSVE YSFFMEDKWE RKVEATKLPK
AIAMEIEIEG LGKIQRKFML PLGAAAPEKS KEEGNKDENT EDNKEDNGDS DNNGDGSGNG
EEDPGKGDPE NEDGA
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