Gene SO_0168 details

Gene Information

• Locus tag: SO_0168
• Symbol: gspF
• ID: 1168055
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella oneidensis MR-1
• Kingdom: Bacteria
• Replicon accession: NC_004347
• Strand: +
• Start bp: 175981
• End bp: 177204
• Gene Length: 1224 bp
• Protein Length: 407 aa
• Translation table: 11
• GC content: 51%
• IMG OID: 637342171
• Product: general secretion pathway protein F
• Protein accession: NP_715810
• Protein GI: 24371768
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG1459] Type II secretory pathway, component PulF
• TIGRFAM ID: [TIGR02120] general secretion pathway protein F

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCAGCAT TTGAATATAA GGCGCTGGAC GCCAAAGGAA AGCAGCTTAA AGGCGTGATC 
GAAGCGGATA CCGCCAGACA CGCCCGCAGC CAGCTGCGCG ATCAACGCTT GATGCCGCTG 
GACATTCTGC CGGTTACTGA AAAAGAAGCC AAGGCCAAAA GCAGTGGCTT TGCTTTATTT 
AAGCGGGGAA TCTCGGTCGC TGAACTCGCG CTGATCACCC GTCAAATCGC CACCTTAGTG 
GCTGCGGGGT TGCCGATTGA GGAATCCCTT AAAGCAGTCG GGCAGCAGTG TGAGAAAGAC 
CGTCTGGCCA GTATGATCAT GGCGGTGCGC TCACGCGTTG TTGAAGGCTA TAGTCTGGCC 
GATTCCTTAG CCGAATTTCC GCATATTTTC GATGACTTGT ACCGCGCGAT GGTGGCCTCG 
GGAGAAAAAT CCGGTCACTT GGAAGTGGTA CTTAATCGTT TAGCCGATTA CACCGAACGT 
CGTCAGCAGC TTAAATCTAA ACTGCAACAG GCGATGATTT ACCCCATTAT GCTGACACTT 
GTCGCCATTG GTGTGGTGTC TGTATTGTTA GCGGCTGTGG TGCCTAAAGT GGTTGGGCAA 
TTTGAACATA TGGGAGCAGA GTTACCCGCC ACCACCCGCT TTTTAATTGC AGCCTCTGAC 
TTTGTGCAAA ATTACGGCCT GCTTGTGGTC TTGGTTCTGG GTATTTTGCT GGTGGTGTTC 
CAGCGTTTAC TCAAGTCACC GATTTTCAAA ATGAAATTCC ATACATTTTT ACTGAAAATG 
CCGGTGATTG GCCGAGTGAG TAAGGGATTA AATACCGCGC GATTTGCCCG AACCTTAAGT 
ATTTTATCTG CCAGTTCTGT GCCCTTGTTA GATGGGATGC GCATTGCCAG TGAAGTGTTG 
CAAAATATGC GCGTGCGTGC GGCGGTGGAT GATGCCACGG CGCGCGTACG GGAAGGAACT 
AGCTTAAGCA CTGCGTTGAC TAACACTAAG CTGTTTCCGG CGATGATGTT ATATATGATC 
GCCTCGGGGG AGAAGAGTGG TCAGCTCGAA GATATGCTTG AGCGCGCGGC AGATAACCAA 
GATCGGGAGT TCGAGAGTAA TGTTACGCTC GCCCTCGGCG TATTCGAACC CATGTTAGTG 
GTGAGCATGG CGGGGGTTGT ACTCTTTATC GTTATGGCCA TTCTGCAACC TATCTTGGCA 
CTGAACAATT TGATTAGTGG CTAG 

 

Protein sequence

MPAFEYKALD AKGKQLKGVI EADTARHARS QLRDQRLMPL DILPVTEKEA KAKSSGFALF 
KRGISVAELA LITRQIATLV AAGLPIEESL KAVGQQCEKD RLASMIMAVR SRVVEGYSLA 
DSLAEFPHIF DDLYRAMVAS GEKSGHLEVV LNRLADYTER RQQLKSKLQQ AMIYPIMLTL 
VAIGVVSVLL AAVVPKVVGQ FEHMGAELPA TTRFLIAASD FVQNYGLLVV LVLGILLVVF 
QRLLKSPIFK MKFHTFLLKM PVIGRVSKGL NTARFARTLS ILSASSVPLL DGMRIASEVL 
QNMRVRAAVD DATARVREGT SLSTALTNTK LFPAMMLYMI ASGEKSGQLE DMLERAADNQ 
DREFESNVTL ALGVFEPMLV VSMAGVVLFI VMAILQPILA LNNLISG