| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BRA0842 |
|---|
| Symbol | hsdR |
|---|
| ID | 1165285 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Brucella suis 1330 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004311 |
|---|
| Strand | + |
|---|
| Start bp | 825603 |
|---|
| End bp | 828506 |
|---|
| Gene Length | 2904 bp |
|---|
| Protein Length | 967 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637331936 |
|---|
| Product | type I restriction-modification enzyme, R subunit |
|---|
| Protein accession | NP_700012 |
|---|
| Protein GI | 23500572 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0610] Type I site-specific restriction-modification system, R (restriction) subunit and related helicases |
|---|
| TIGRFAM ID | [TIGR00348] type I site-specific deoxyribonuclease, HsdR family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.156677 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGCTGTTCG ACTATAAGCC CCTGTCACCA GAGGACGTGC GACGGCTGCG CGATGGTCTT
GCAACAGAGC CGGTTCTGAC GCTTCGCCTT GCGGAATGCC TGACGCGCCT TAATCCGTGG
CTTGACGATG ACGGCGTTCG TCGCGCTGTT GCCGCCGTCA CGCGCGTTAC AGCCGTCGAT
GTGATGGAGG CTAACGAGAG CGCCTATACG GCCCTCACCT ATGGCGTGAC GGCCCCCCAT
ACAGAAGGCG GCAGACGACA GGACCGCAAT GTGCGGTTCT TCGATTTCGA TGATCCATCA
GCCAACACGT TCGAGTTCGC TCGGCAAGTC GCCATCAAGG GCGCTCGTCA GGACATCATC
CCCGATATTG TGGTTTACGT GAATGGGCTG CCGCTCGCAG CCATCGAATG TAAATCGCCG
TCATTGGCGG ACCCGATGGG CGAGGCGATC CGCCAGTTCC GCCGTTATGA AAACCGGGAT
GAATTCGCCG GGCTTGGCGC TCCCCGCCTG TTCGAGACGG CGCAGATTTC CATCGCACTG
GCGCGCGATG TGGCGAAGTA CGGCACGACG CTGACGCCTG CCCGGCAATG GGCTGAATGG
AAAGATCCCT ATCCGCTCAC GCTGGACGCG CTTGCGGCGC AATTGGGGCG AACACCAACC
GGACAAGACA TCTTGCTCGC CGGGCTTCTC GCCCCGGCCA ATCTGCTTGA TCTCATCCGC
AACTTCGTCG TGTTCGAGAC TATCGGCGGG CGGCGCATCA AGAAGCTGGC GCGCTATCAG
CAATTCGTTG CCGTCGGTAA AGCGATTGAG CGCATCCGGA CGGCGCCCAA TCCTCAGCGC
CGTGGCGGGG TCATCCACCA TACCCAAGGC TCCGGTAAAT CGCTGACGAT GGTGTTTCTT
GCGACCAAGC TGCGCCGCCT CCCCGAAGCC GAAAATCCGA CCATTGTCAT CGTCACGGAT
AGAACCGACC TTGATGACCA GATCACTGGG CAATTCCAGC GCTCGGGATT TGCCAATCCC
ATACAGGCCG AAAGTGGGGA CTCGCTGCGC AAGGCTTTGT CGGGCGGCGC TGGAACGACA
GTTCTGACGA CCGTCCATAA GTTTCACAGC GCCGTGCCGA AACGCTCTTC GGTTATCTCC
AAGGCGCGGA ATGTCTTCGT CATGGTCGAT GAAGCGCACC GGACGCAATA TGGTGCGCTT
GCCGCCCGGA TGCGCGCAGG GTTGCCCAAT GCCTGTATGA TCGCCTTCAC CGGCACACCA
ATCGACAAAA AAGACCGGAG CACCCGCGAG GCCTTCGGCG ATTACCTGCA CCGCTACCTG
ATCGATCAGG CTGTGAAGGA TGGAGCCACC GTCCCGATCT ATTACGAGAT GCGGGATGCG
CGCATTAGGA TCGACGGACG CGATTTTGAA CGGGAAGTTC GGGCAGCGTT CCCGGAACTA
TCCGAAGACG AGATTGCAAA ACTCAGACGT GGCACCGGCC TTCAGGAGAA GTTAGCTGGA
GCGCCGGTTC GCGTTGAGGC CATCGCCCAA GATATACTCT CGCACTATCG AAGCACGATT
GAACCGAACG GGTTCAAAGC GCAGATCGTG ACAGTGAGCC GGGACGTCGC CGTTACCTAC
GTCGAGGCAT TGGAGCGGCT TGGCGCGCCC GAATGCGCGC TCATCATGTC CGCATCCAAC
AATGACAGCG CCCGGTTGCA AGCCCGTCAC CTGTCCAAGC GCGACCGCGA CAGCAAAATT
AGCCGCTTCA AGAAGCGCGA CGATCCGCTG AAAATCTTGG TCGTGTGCGA CATGCTGCTG
ACCGGATTTG ATGCGCCGAT AGAGCAGGTT CTATATCTCG ACGCGCCTCT GCGGGAACAT
ACGCTTTTGC AGGCCATCGC ACGCGTGAAC CGCACTGCTG ACGGCAAGAC CTATGGGCTT
GTCGTGGACT ATTGGGGAGA TAACCGCCGC ATCGCAGATG CCTTGGATAT GTTCTCCGAC
GAGGACGGCA TAGCCAGTGC GCTCCGTCCG CTCTCTGAGA AAATCCAGCT TCTTGAAAGT
CGGCATCGTG CGGCCATTCG GCTATTCGAA GGTATTAGCC ATCAGAACGA TACCGCGTGT
GTTGAACTGC TGCGTCAGGA CGACATCCGC GCCAAATTCG AACTCGACTT CCTGCGTTTT
GCCGAAGCCA TGGACATGGT CTTGCCCAAC CCAAAGGCGT TGGAAGACCC CTATCCATCC
GATCTGAAGT GGCTATCGCG TATTCGTGTT CTCGCCCGCC GCGCCTATCA CGAGGAGCCG
TTTGACCCGA AGGACTATGG CGCGAAGGTC GGCGAGATCA TCACCAGCCA CCTCTTTGTG
ACCGGTGTCG AGCAGTTGTT GTTGAAGTTC GATATTCTCG ACCCCGCCTT CCGTCCGCAT
CTGGAAAGCC TGCGGTCGAG CGATACCAAA GCTGCAGAGA TCGAGCACGC CATCCGCCAG
GAAATCCACG TCCACCGCGA CGAAAACCCC ACGGCCTATG CCTCGCTTTG GGAGCAGTTG
GAGCGGATCG TCAACGACAG GCGGGAAGCT CGTGTGTCCG CTGCTAGCGC ATTGACCCAG
CTTGAAGCAA TGGTGGGGCA AGCTGCAGAT ATTCGTTCGG GCGCGGCGAG CAGGAGCGAC
GGCCTCAATG GAACGGCTGC CGCCATCCTG CCGTTCATTG ACAACGATCT ACCCGACGCC
GAGCGATCCC GAAGCGCTGC GGGGATCACC AAGGCACTCG AGGAATATGC CGAAGTTGTT
GACTGGCAGC ACAAGGAGGA CGTGCAGCGT CAGATGCGCC GATCCATCAA GGAGCAGTTA
CGCAGCTTAG GATTGGATGC GCACAAAATC GAGGCCACGA CGGCAAAGAT CATGGATGTC
GCCCGTGCGA GGTACGCGGG ATGA
|
|---|
| Protein sequence | MLFDYKPLSP EDVRRLRDGL ATEPVLTLRL AECLTRLNPW LDDDGVRRAV AAVTRVTAVD
VMEANESAYT ALTYGVTAPH TEGGRRQDRN VRFFDFDDPS ANTFEFARQV AIKGARQDII
PDIVVYVNGL PLAAIECKSP SLADPMGEAI RQFRRYENRD EFAGLGAPRL FETAQISIAL
ARDVAKYGTT LTPARQWAEW KDPYPLTLDA LAAQLGRTPT GQDILLAGLL APANLLDLIR
NFVVFETIGG RRIKKLARYQ QFVAVGKAIE RIRTAPNPQR RGGVIHHTQG SGKSLTMVFL
ATKLRRLPEA ENPTIVIVTD RTDLDDQITG QFQRSGFANP IQAESGDSLR KALSGGAGTT
VLTTVHKFHS AVPKRSSVIS KARNVFVMVD EAHRTQYGAL AARMRAGLPN ACMIAFTGTP
IDKKDRSTRE AFGDYLHRYL IDQAVKDGAT VPIYYEMRDA RIRIDGRDFE REVRAAFPEL
SEDEIAKLRR GTGLQEKLAG APVRVEAIAQ DILSHYRSTI EPNGFKAQIV TVSRDVAVTY
VEALERLGAP ECALIMSASN NDSARLQARH LSKRDRDSKI SRFKKRDDPL KILVVCDMLL
TGFDAPIEQV LYLDAPLREH TLLQAIARVN RTADGKTYGL VVDYWGDNRR IADALDMFSD
EDGIASALRP LSEKIQLLES RHRAAIRLFE GISHQNDTAC VELLRQDDIR AKFELDFLRF
AEAMDMVLPN PKALEDPYPS DLKWLSRIRV LARRAYHEEP FDPKDYGAKV GEIITSHLFV
TGVEQLLLKF DILDPAFRPH LESLRSSDTK AAEIEHAIRQ EIHVHRDENP TAYASLWEQL
ERIVNDRREA RVSAASALTQ LEAMVGQAAD IRSGAASRSD GLNGTAAAIL PFIDNDLPDA
ERSRSAAGIT KALEEYAEVV DWQHKEDVQR QMRRSIKEQL RSLGLDAHKI EATTAKIMDV
ARARYAG
|
|---|
| |