| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SAG1482 |
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| Symbol | vacB |
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| ID | 1014291 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Streptococcus agalactiae 2603V/R |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004116 |
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| Strand | - |
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| Start bp | 1502203 |
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| End bp | 1504608 |
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| Gene Length | 2406 bp |
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| Protein Length | 801 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 637316654 |
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| Product | VacB/Rnb family exoribonuclease |
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| Protein accession | NP_688476 |
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| Protein GI | 22537625 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.0098629 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAGAAA AAATTATAAA ATATTTGGAA GAACACGGTA AAACCAGCGT TAATGATTTA
GCTGCTGCCC TAGATATGGC AGGCGCAAAA GCATTTCCAA AATTAATCAA AACAATCTCA
AATTTGGAGA GCCACAGGCA ATTAAGATTT GACGATAATG GAAGTCTTTC TCTTCAAAAG
AAAGAAGCTA AGAAAAAGGA AATCACAGTA AGGGGTCTTT TTAGAGCAAA TAAAGCAGGA
TTTGGTTTTC TTAGTATTGA CCAAGACGAA GATGATATGT TTATCGGAAA AAACGATATT
GCTTATGCTA TTGATGGTGA CACGGTAGAA GCTGTTGTAA AGAAACCAGC GGACCGTCTT
AACGGGACTG CAGCAGAAGC GCGTGTTGTT AATATTGTTG AACGTAGTTT AAAGACGCTT
GTTGGTAAGT TTGTCTTAGA CGATGAGCGC CCTAAATACG CAGGATATAT CAAATCGAAA
AATCAAAAAA TCAATCAAAA GATTTATATA CGCAAAGAAC CGGTCGTTTT AGACGGAACA
GAAATTATCA AAGTAGATAT TGATAAATAT CCGACACGAG GACATGATTA CTTCGTAGCA
AGTGTTCGTG ATATCGTTGG ACATCAAGGA GATGTTGGTA TTGATGTTTT AGAAGTCTTG
GAAAGTATGG ATATCGTCTC AGAATTTCCT GAGGACGTTA TTGCAGAAGC CAATGCTATC
CCAGATGCTC CAACGGAGAA AGATTTAATT GGGCGTGTTG ATTTACGTCA AGAGGTCACT
TTCACTATTG ATGGAGCGGA CGCCAAAGAT TTAGACGATG CTGTGCATAT TAAATTACTG
GATAATGGTC ATTTTGAACT TGGAGTTCAT ATCGCAGATG TATCATACTA CGTTACTGAA
GGCTCTGCCT TAAATCGTGA AGCACTTAGT CGTGGTACGT CCGTATATGT CACAGATCGC
GTTGTACCAA TGTTACCAGA GCGTCTATCT AACGGTATAT GTTCATTAAA TCCAAATCTT
GATCGTTTAA CGCAGTCTTG TATTATGGAA ATTGACCAAA ATGGGAGAGT TGTTAATCAT
CAAATTACAC AGTCAGTGAT TAATACCACT TATCGTATGA CTTATACCGC TGTAAATGAT
ATTATTGCTG GCGATGAGGA AATCTGCTCA GAATATGAGT CTATTGTGTC CTCAGTACAG
CATATGGTCA CTTTACACCA TACTTTGGAA GCTATGCGTA CGCGTCGTGG AGCGCTGAAT
TTTGACACAT CTGAAGCAAA AATTATGGTT AATGATAAGG GAATGCCAGT TGATATTGTT
ATTCGCAACA GAGGCATTGC TGAACGCATG ATTGAGTCAT TTATGTTGGC GGCAAATGAA
ACGGTTGCTG AACATTATGC TCGTCTAAAA CTGCCATTTA TTTATCGTAT ACACGAAGAG
CCTAAAGCTG AAAAATTACA AAAATTCATC GATTATGCTT CTGTTTTCGG TGTTCAGATT
CAAGGAACAG CAACTAAAAT CACCCAATCT GCTTTACAGG ACTTTATGAA AAAAGTACAA
GGGCAGCCAG GAAGTGAAGT GTTATCTATG ATGTTATTGC GCTCGATGCA ACAAGCTAGA
TATTCTGAAC ACAACCATGG ACATTATGGA CTTGCTGCGG AATATTACAC TCACTTTACT
AGCCCCATTC GACGTTATCC AGACTTGTTA GTTCATCGTA TGATTCGTGA TTATGATGAT
AAAGCGATGG ATAAAGCTGA TCATTTTGCT AACCTTATCC CAGAAATTGC AACTCAAACG
TCTAGTCTTG AGAGACGTGC CATTGATGCT GAACGTATTG TAGAGGCAAT GAAGAAAGCC
GAATATATGG AAGAATATGT TGGTGAGGAA TTTGAAGGTG TGGTTGCAAG CGTTGTTAAA
TTTGGTATGT TTGTAGAATT ACCAAATACT ATTGAAGGAT TGATTCACGT AACGACCTTG
CCTGAATATT ATCACTTTAA TGAACGTACG CTGACGCTTC AAGGTGAGAA ATCTGGGAAA
GTTTTCCGTG TTGGTCAACA AATTAAGGTT AAGTTGATTC GTTCTGATAA GGAAACTGGT
GATATCGATT TTGATTATTT ACCATCAGAT TTTGATATTG TTGAAAAGGT AAGTAAAAGT
TCGCGTGAGG GTCGTCCTAA TAGAAGTTCT AAACGAGAAC ATCAGCATAG AATTTCTGAT
CGTGATAATA AGAATAAAAA TACATCTAAG AAAAAAGCAT CTCGAAAACC CAAAAGGAAC
TCGGATAGCA AATCACATCA TCATAAAGAC GATAGAACAA CAGGTTCAAC CAAGAAAAAA
ACGAAAAAAC CTTTCTATAA AGGCGTTGCT AAGAAAGGTC AGAAACGGAA ATCTAAGAAA
GGTTAA
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| Protein sequence | MKEKIIKYLE EHGKTSVNDL AAALDMAGAK AFPKLIKTIS NLESHRQLRF DDNGSLSLQK
KEAKKKEITV RGLFRANKAG FGFLSIDQDE DDMFIGKNDI AYAIDGDTVE AVVKKPADRL
NGTAAEARVV NIVERSLKTL VGKFVLDDER PKYAGYIKSK NQKINQKIYI RKEPVVLDGT
EIIKVDIDKY PTRGHDYFVA SVRDIVGHQG DVGIDVLEVL ESMDIVSEFP EDVIAEANAI
PDAPTEKDLI GRVDLRQEVT FTIDGADAKD LDDAVHIKLL DNGHFELGVH IADVSYYVTE
GSALNREALS RGTSVYVTDR VVPMLPERLS NGICSLNPNL DRLTQSCIME IDQNGRVVNH
QITQSVINTT YRMTYTAVND IIAGDEEICS EYESIVSSVQ HMVTLHHTLE AMRTRRGALN
FDTSEAKIMV NDKGMPVDIV IRNRGIAERM IESFMLAANE TVAEHYARLK LPFIYRIHEE
PKAEKLQKFI DYASVFGVQI QGTATKITQS ALQDFMKKVQ GQPGSEVLSM MLLRSMQQAR
YSEHNHGHYG LAAEYYTHFT SPIRRYPDLL VHRMIRDYDD KAMDKADHFA NLIPEIATQT
SSLERRAIDA ERIVEAMKKA EYMEEYVGEE FEGVVASVVK FGMFVELPNT IEGLIHVTTL
PEYYHFNERT LTLQGEKSGK VFRVGQQIKV KLIRSDKETG DIDFDYLPSD FDIVEKVSKS
SREGRPNRSS KREHQHRISD RDNKNKNTSK KKASRKPKRN SDSKSHHHKD DRTTGSTKKK
TKKPFYKGVA KKGQKRKSKK G
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