Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SAG1426 |
Symbol | rpoD |
ID | 1014235 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Streptococcus agalactiae 2603V/R |
Kingdom | Bacteria |
Replicon accession | NC_004116 |
Strand | - |
Start bp | 1437270 |
End bp | 1438379 |
Gene Length | 1110 bp |
Protein Length | 369 aa |
Translation table | 11 |
GC content | 38% |
IMG OID | 637316601 |
Product | RNA polymerase sigma factor RpoD |
Protein accession | NP_688423 |
Protein GI | 22537572 |
COG category | [K] Transcription |
COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.0144524 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCAGAGA AAAAAGGAAA TACAACTTTT AATGTTCAAG TTGCGGATTT TATTCGCAAT CATAAAAAAC AAGGTACTGC AATTGATGAT GAGGTAACAG AAAAACTTGT TATTCCTTTT GTTTTAGATG CAGATCAAAT TGATGATTTG TTAGAACGAT TGACAGACGG TGGCATTTCA ATCACAGATA AAGAAGGCAA TCCTTCAACA AAGTATGTGG TAGAAGGGCC AAAACCTGAA GAATTGACTG ATGAAGAGCT CATAGGAAGT AATTCTGCTA AAGTCAATGA CCCAGTACGT ATGTACTTGA AGGAAATTGG TGTTGTTCCT CTTTTAACGA ATGAAGAAGA AAAAGAATTG GCTGTTGCGG TTGCTGAGGG AGATTTAATG GCTAAACAAC GTTTAGCTGA AGCAAACCTT CGTCTTGTTG TCTCAATTGC AAAACGTTAT GTTGGACGTG GAATGCAATT TCTTGATTTA ATTCAAGAGG GTAACATGGG GCTCATGAAA GCTGTTGATA AATTTGATTA TTCAAAGGGA TTCAAATTTT CAACTTATGC AACATGGTGG ATTCGTCAAG CTATAACACG TGCAATTGCA GATCAAGCAC GTACGATTCG TATTCCTGTT CATATGGTTG AAACGATTAA TAAATTGGTC CGTGAACAAC GTAATCTTCT TCAAGAACTT GGTCAAGATC CAACTCCTGA GCAAATCGCA GAACGCATGG ATATGACACC AGATAAAGTA CGTGAAATCC TAAAAATTGC TCAAGAGCCG GTATCGCTAG AAACGCCAAT CGGTGAGGAA GATGATAGCC ATTTGGGTGA TTTCATTGAA GACGAAGTTA TTGAAAATCC AGTAGATTAT ACTACACGTG TTGTTCTTCG TGAGCAATTA GATGAGGTTT TAGATACTCT TACTGACCGT GAAGAGAATG TTCTTCGTTT ACGCTTTGGT CTTGACGATG GTAAAATGCG TACGTTAGAG GACGTAGGTA AAGTATTTAA TGTTACTCGT GAGCGCATTC GTCAGATTGA AGCTAAAGCC CTTAGAAAAC TTCGCCATCC TAGTCGTAGC AAGCAACTTA AAGATTTCAT GGAAGATTGA
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Protein sequence | MAEKKGNTTF NVQVADFIRN HKKQGTAIDD EVTEKLVIPF VLDADQIDDL LERLTDGGIS ITDKEGNPST KYVVEGPKPE ELTDEELIGS NSAKVNDPVR MYLKEIGVVP LLTNEEEKEL AVAVAEGDLM AKQRLAEANL RLVVSIAKRY VGRGMQFLDL IQEGNMGLMK AVDKFDYSKG FKFSTYATWW IRQAITRAIA DQARTIRIPV HMVETINKLV REQRNLLQEL GQDPTPEQIA ERMDMTPDKV REILKIAQEP VSLETPIGEE DDSHLGDFIE DEVIENPVDY TTRVVLREQL DEVLDTLTDR EENVLRLRFG LDDGKMRTLE DVGKVFNVTR ERIRQIEAKA LRKLRHPSRS KQLKDFMED
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