Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SAG0008 |
Symbol | mfd |
ID | 1012726 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Streptococcus agalactiae 2603V/R |
Kingdom | Bacteria |
Replicon accession | NC_004116 |
Strand | + |
Start bp | 6248 |
End bp | 9745 |
Gene Length | 3498 bp |
Protein Length | 1165 aa |
Translation table | 11 |
GC content | 34% |
IMG OID | 637315131 |
Product | transcription-repair coupling factor |
Protein accession | NP_687044 |
Protein GI | 22536193 |
COG category | [K] Transcription [L] Replication, recombination and repair |
COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATATTA TAGAATTATT TAGCCAAAAT AAAGTGGTGC GGACATGGCA CTCTGGATTA GTAACTAATA GTCGCCAATT AGTTATGGGG TTTTCAGGAG CAAGTAAAGC TATTGCCATA GCATCAGCCT ACGAGAAGTT ATCTAAAAAA ATTATGGTAG TCACTGCCAC TCAAACCGAT TCTGATAAAT TATCAAGTGA TATATCAAGT TTAATTGGAG AAGATAACGT TTATCAATTT TTTGCTGATG ACGTTCCTGC AGCAGAGTTT ATTTTCTCTT CATTAGATAA ATCAATTTCA CGACTCAGTG CCCTGAGGTT TCTAAAAGAT CCAGAAAAAA ACGGTGTTTT GATTACTAGT ATCAGTGGTT TAAGGTTACT ATTACCAAAT CCGGAAGTTT TCTCGAAAAG TCAATATAAG TTTGAAATCG GTCAAGAATG TTATTTAGAT AAATTGTGTA AGAACCTAGT CAATTTAGGT TATCAGAAAG TTTCTCAAGT ATTTAGTCCT GGTGAATTTA GCCAAAGAGG AGATATTTTA GATATTTTTG AGATGACACA AGAATATCCT TATCGCTTGG AATTCTTCGG AGATGAAATA GATGGCATCA GGCAGTTTGA TATTGACACT CAAAAGTCTC TTAAACAATT AGAGTCAGTA CAGATTTCGC CAGCAGATGA TATTATTTTA CAAGATGCAG ATTTCGAGCG TGCAAAGAAA AAACTTGAGG GCTATCTAGT AACAGCTAGT GAGGTACAAC GCACCTATTT GAGCGAGGTT TTATCTACAA CTGAGAATCA TTTTAAGCAC TCAGATATTC GTCGTTTTCT AAGTATCTTT TATGAAAAAG AATGGGGAAT ATTAGACTAT ATTCCTGAGG GAACTCCACT TTTTGTTGAT GATTTTCAAA AAATTGTAGA TCGAAATGCT AAGTTAGATT TAGAAATAGC TAGCCTTCTG ACGGAAGATT TACAACAAGG CAAGTCTCAT TCTAGTTTGA ACTATTTTTC AGATCCTTAT AAGCAATTAA GACAATACCA ACCAGCAACC TTCTTTTCAA ATTTCCACAA AGGATTAGGA AATCTGAAAT TTGATAAACT TCATCATTTT ACTCAATATG GAATGCAAGA ATTTTTTAAT CAATTTCCAT TGTTGGTCGA TGAAATCAAT CGTTATAAGA AATCTGGAGC GACAGTACTG TTGCAAGTAG ATTCTCAAAA AGGTTTAAAT CTCCTTCAAG AAAATTTAAA AGAATATGGG TTAGATTTAA TCATTTCAGA TAAAAACGAT ATCGTTCAAA AGGAGTCACA ACTTATTGTT GGGCATCTTT CAAATGGTTT TTATTTTGCA GATGAGAAAA TTGTTCTGAT TACTGAACGT GAGATTTATC ATAGGCGTGT TAAAAGGAAA ATTAGACGCA GTAATATTAG TAATGCAGAA CGTCTAAAAG ATTATAATGA ACTTTCAGTT GGCGATTATG TTGTTCATAA TGTTCATGGC GTAGGAAAAT TTTTAGGTAT TGAAACAATT GAGATACAAG GTATTCATCG TGATTATCTG ACTATTCAAT ATCAAAATGC TGATCGTATC TCTATCCCCG TAGAACAAAT TGAACTTCTA ACAAAATATG TCTCTGCAGA TGGCAAAGAG CCTAAAATTA ATACGTTAAA TGATGGTCGC TTCAAAAAAG CAAAACAGAG AGTTGCAAAG CAAGTAGAAG ATATTGCTGA TGATTTGTTG AAACTTTATG CAGAGCGTAG TCAATTACAA GGATTTGCAT TTTCTCCTGA CGATAATATG CAAAATGACT TTGATAATGA TTTTGCATAT GTAGAGACAG AGGATCAATT GCGGTCTATA AAAGAAATTA AACAGGATAT GGAAGGTAAT CGTCCGATGG ATCGATTATT GGTTGGAGAC GTTGGTTTTG GTAAGACAGA GGTTGCTATG CGTGCGGCTT TCAAAGCTGT CAATGACCAT AAACAAGTTG TTGTTTTAGT CCCAACAACA GTTCTAGCCC AGCAGCATTT TGAAAATTTT AAAGAACGTT TTAGCAATTA TCCTGTTACA GTTGATGTAC TTAGTCGTTT TCGTAGCAAA AAAGAACAAA CAGATACACT AAAAAGATTA TCTAAGGGCC AAGTTGATAT TATTATTGGA ACACATCGAC TTCTCTCTCA AGATGTTGTA TTTTCGGATT TAGGGTTAAT AGTTATTGAT GAGGAACAGC GATTTGGTGT AAAGCATAAA GAAAAGTTAA AAGAATTAAA AACAAAAGTT GATGTATTAA CTTTGACAGC GACCCCAATA CCTAGAACAT TACATATGTC AATGCTTGGC ATTAGAGACT TATCAGTCAT TGAAACACCT CCAACTAATC GTTATCCTGT GCAGACTTAC GTTTTGGAGA CAAATCCTGG TTTAGTTAGA GAAGCTATTA TTCGTGAGAT AGACAGAGGA GGACAGGTTT TTTATGTTTA CAATAAAGTT GACACTATTG ATCAGAAAGT TTCAGAACTT CAGGAGTTAG TACCAGAAGC TAGTATTGGT TTTGTTCATG GTCAAATGTC TGAAATTCAA TTAGAAAATA CATTAATAGA CTTTATCAAT GGAGATTACG ATGTTTTAGT TGCAACGACA ATAATTGAGA CAGGAGTCGA TATTTCAAAT GTTAATACCC TCTTTGTTGA AAATGCAGAT CATATGGGCT TGTCAACCCT TTATCAATTA AGAGGCCGTG TGGGTAGAAG TAATCGCATT GCTTATGCTT ACCTTATGTA CAGACCTGAT AAAGTTTTAA CAGAAATTTC TGAGAAAAGA CTAGATGCAA TCAAAGGGTT TACAGAATTG GGATCTGGTT TTAAAATAGC GATGCGTGAT TTATCTATAC GTGGTGCAGG AAATATTTTA GGAGCTTCAC AAAGTGGTTT TATTGATTCG GTTGGATTCG AGATGTATTC ACAGCTTCTA GAGCAAGCGA TTGCCACCAA ACAAGGGAAA TCATTAATTC GTCAAAAAGG TAATGCTGAA TTAGCCTTAC AAATTGACGC CTATTTACCA GCAGAATATA TATCAGATGA GCGCCAAAAA ATAGAAATAT ATAAGCGTAT TCGTGAATTA GAAACTAGGG CTGATTATGA AGCCTTACAA GATGAGTTAA TAGATCGTTT TGGAGAATAT CCTGATCAAG TTGCATACCT TTTAGAAATA GGACTTTTAA AAGCTTATCT GGACCTTGCC TTTACTGAAT TAGTAGAAAG AAAAGGTAAT GAAATAAGCA TCCTATTTGA AAAAGCATCT TTGAAGTATT TTTTAACTCA AGATTATTTT GAAGCACTAT CAAAAACTCA ACTTAAGGCT AGAATTAGCG AAACAAATGG TAAGATGGAA GTTGTTTTTA ATATCAAACA TAAGAAAAAT TATGAAATTA TTGAAGAACT TCTAAAATTT GCCGAATGTT TTATCGAGAT TAAGTCACGT AAACCAGTAG AAGAATAA
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Protein sequence | MNIIELFSQN KVVRTWHSGL VTNSRQLVMG FSGASKAIAI ASAYEKLSKK IMVVTATQTD SDKLSSDISS LIGEDNVYQF FADDVPAAEF IFSSLDKSIS RLSALRFLKD PEKNGVLITS ISGLRLLLPN PEVFSKSQYK FEIGQECYLD KLCKNLVNLG YQKVSQVFSP GEFSQRGDIL DIFEMTQEYP YRLEFFGDEI DGIRQFDIDT QKSLKQLESV QISPADDIIL QDADFERAKK KLEGYLVTAS EVQRTYLSEV LSTTENHFKH SDIRRFLSIF YEKEWGILDY IPEGTPLFVD DFQKIVDRNA KLDLEIASLL TEDLQQGKSH SSLNYFSDPY KQLRQYQPAT FFSNFHKGLG NLKFDKLHHF TQYGMQEFFN QFPLLVDEIN RYKKSGATVL LQVDSQKGLN LLQENLKEYG LDLIISDKND IVQKESQLIV GHLSNGFYFA DEKIVLITER EIYHRRVKRK IRRSNISNAE RLKDYNELSV GDYVVHNVHG VGKFLGIETI EIQGIHRDYL TIQYQNADRI SIPVEQIELL TKYVSADGKE PKINTLNDGR FKKAKQRVAK QVEDIADDLL KLYAERSQLQ GFAFSPDDNM QNDFDNDFAY VETEDQLRSI KEIKQDMEGN RPMDRLLVGD VGFGKTEVAM RAAFKAVNDH KQVVVLVPTT VLAQQHFENF KERFSNYPVT VDVLSRFRSK KEQTDTLKRL SKGQVDIIIG THRLLSQDVV FSDLGLIVID EEQRFGVKHK EKLKELKTKV DVLTLTATPI PRTLHMSMLG IRDLSVIETP PTNRYPVQTY VLETNPGLVR EAIIREIDRG GQVFYVYNKV DTIDQKVSEL QELVPEASIG FVHGQMSEIQ LENTLIDFIN GDYDVLVATT IIETGVDISN VNTLFVENAD HMGLSTLYQL RGRVGRSNRI AYAYLMYRPD KVLTEISEKR LDAIKGFTEL GSGFKIAMRD LSIRGAGNIL GASQSGFIDS VGFEMYSQLL EQAIATKQGK SLIRQKGNAE LALQIDAYLP AEYISDERQK IEIYKRIREL ETRADYEALQ DELIDRFGEY PDQVAYLLEI GLLKAYLDLA FTELVERKGN EISILFEKAS LKYFLTQDYF EALSKTQLKA RISETNGKME VVFNIKHKKN YEIIEELLKF AECFIEIKSR KPVEE
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