Gene SAG0008 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSAG0008 
Symbolmfd 
ID1012726 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameStreptococcus agalactiae 2603V/R 
KingdomBacteria 
Replicon accessionNC_004116 
Strand
Start bp6248 
End bp9745 
Gene Length3498 bp 
Protein Length1165 aa 
Translation table11 
GC content34% 
IMG OID637315131 
Producttranscription-repair coupling factor 
Protein accessionNP_687044 
Protein GI22536193 
COG category[K] Transcription
[L] Replication, recombination and repair 
COG ID[COG1197] Transcription-repair coupling factor (superfamily II helicase) 
TIGRFAM ID[TIGR00580] transcription-repair coupling factor (mfd) 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATATTA TAGAATTATT TAGCCAAAAT AAAGTGGTGC GGACATGGCA CTCTGGATTA 
GTAACTAATA GTCGCCAATT AGTTATGGGG TTTTCAGGAG CAAGTAAAGC TATTGCCATA
GCATCAGCCT ACGAGAAGTT ATCTAAAAAA ATTATGGTAG TCACTGCCAC TCAAACCGAT
TCTGATAAAT TATCAAGTGA TATATCAAGT TTAATTGGAG AAGATAACGT TTATCAATTT
TTTGCTGATG ACGTTCCTGC AGCAGAGTTT ATTTTCTCTT CATTAGATAA ATCAATTTCA
CGACTCAGTG CCCTGAGGTT TCTAAAAGAT CCAGAAAAAA ACGGTGTTTT GATTACTAGT
ATCAGTGGTT TAAGGTTACT ATTACCAAAT CCGGAAGTTT TCTCGAAAAG TCAATATAAG
TTTGAAATCG GTCAAGAATG TTATTTAGAT AAATTGTGTA AGAACCTAGT CAATTTAGGT
TATCAGAAAG TTTCTCAAGT ATTTAGTCCT GGTGAATTTA GCCAAAGAGG AGATATTTTA
GATATTTTTG AGATGACACA AGAATATCCT TATCGCTTGG AATTCTTCGG AGATGAAATA
GATGGCATCA GGCAGTTTGA TATTGACACT CAAAAGTCTC TTAAACAATT AGAGTCAGTA
CAGATTTCGC CAGCAGATGA TATTATTTTA CAAGATGCAG ATTTCGAGCG TGCAAAGAAA
AAACTTGAGG GCTATCTAGT AACAGCTAGT GAGGTACAAC GCACCTATTT GAGCGAGGTT
TTATCTACAA CTGAGAATCA TTTTAAGCAC TCAGATATTC GTCGTTTTCT AAGTATCTTT
TATGAAAAAG AATGGGGAAT ATTAGACTAT ATTCCTGAGG GAACTCCACT TTTTGTTGAT
GATTTTCAAA AAATTGTAGA TCGAAATGCT AAGTTAGATT TAGAAATAGC TAGCCTTCTG
ACGGAAGATT TACAACAAGG CAAGTCTCAT TCTAGTTTGA ACTATTTTTC AGATCCTTAT
AAGCAATTAA GACAATACCA ACCAGCAACC TTCTTTTCAA ATTTCCACAA AGGATTAGGA
AATCTGAAAT TTGATAAACT TCATCATTTT ACTCAATATG GAATGCAAGA ATTTTTTAAT
CAATTTCCAT TGTTGGTCGA TGAAATCAAT CGTTATAAGA AATCTGGAGC GACAGTACTG
TTGCAAGTAG ATTCTCAAAA AGGTTTAAAT CTCCTTCAAG AAAATTTAAA AGAATATGGG
TTAGATTTAA TCATTTCAGA TAAAAACGAT ATCGTTCAAA AGGAGTCACA ACTTATTGTT
GGGCATCTTT CAAATGGTTT TTATTTTGCA GATGAGAAAA TTGTTCTGAT TACTGAACGT
GAGATTTATC ATAGGCGTGT TAAAAGGAAA ATTAGACGCA GTAATATTAG TAATGCAGAA
CGTCTAAAAG ATTATAATGA ACTTTCAGTT GGCGATTATG TTGTTCATAA TGTTCATGGC
GTAGGAAAAT TTTTAGGTAT TGAAACAATT GAGATACAAG GTATTCATCG TGATTATCTG
ACTATTCAAT ATCAAAATGC TGATCGTATC TCTATCCCCG TAGAACAAAT TGAACTTCTA
ACAAAATATG TCTCTGCAGA TGGCAAAGAG CCTAAAATTA ATACGTTAAA TGATGGTCGC
TTCAAAAAAG CAAAACAGAG AGTTGCAAAG CAAGTAGAAG ATATTGCTGA TGATTTGTTG
AAACTTTATG CAGAGCGTAG TCAATTACAA GGATTTGCAT TTTCTCCTGA CGATAATATG
CAAAATGACT TTGATAATGA TTTTGCATAT GTAGAGACAG AGGATCAATT GCGGTCTATA
AAAGAAATTA AACAGGATAT GGAAGGTAAT CGTCCGATGG ATCGATTATT GGTTGGAGAC
GTTGGTTTTG GTAAGACAGA GGTTGCTATG CGTGCGGCTT TCAAAGCTGT CAATGACCAT
AAACAAGTTG TTGTTTTAGT CCCAACAACA GTTCTAGCCC AGCAGCATTT TGAAAATTTT
AAAGAACGTT TTAGCAATTA TCCTGTTACA GTTGATGTAC TTAGTCGTTT TCGTAGCAAA
AAAGAACAAA CAGATACACT AAAAAGATTA TCTAAGGGCC AAGTTGATAT TATTATTGGA
ACACATCGAC TTCTCTCTCA AGATGTTGTA TTTTCGGATT TAGGGTTAAT AGTTATTGAT
GAGGAACAGC GATTTGGTGT AAAGCATAAA GAAAAGTTAA AAGAATTAAA AACAAAAGTT
GATGTATTAA CTTTGACAGC GACCCCAATA CCTAGAACAT TACATATGTC AATGCTTGGC
ATTAGAGACT TATCAGTCAT TGAAACACCT CCAACTAATC GTTATCCTGT GCAGACTTAC
GTTTTGGAGA CAAATCCTGG TTTAGTTAGA GAAGCTATTA TTCGTGAGAT AGACAGAGGA
GGACAGGTTT TTTATGTTTA CAATAAAGTT GACACTATTG ATCAGAAAGT TTCAGAACTT
CAGGAGTTAG TACCAGAAGC TAGTATTGGT TTTGTTCATG GTCAAATGTC TGAAATTCAA
TTAGAAAATA CATTAATAGA CTTTATCAAT GGAGATTACG ATGTTTTAGT TGCAACGACA
ATAATTGAGA CAGGAGTCGA TATTTCAAAT GTTAATACCC TCTTTGTTGA AAATGCAGAT
CATATGGGCT TGTCAACCCT TTATCAATTA AGAGGCCGTG TGGGTAGAAG TAATCGCATT
GCTTATGCTT ACCTTATGTA CAGACCTGAT AAAGTTTTAA CAGAAATTTC TGAGAAAAGA
CTAGATGCAA TCAAAGGGTT TACAGAATTG GGATCTGGTT TTAAAATAGC GATGCGTGAT
TTATCTATAC GTGGTGCAGG AAATATTTTA GGAGCTTCAC AAAGTGGTTT TATTGATTCG
GTTGGATTCG AGATGTATTC ACAGCTTCTA GAGCAAGCGA TTGCCACCAA ACAAGGGAAA
TCATTAATTC GTCAAAAAGG TAATGCTGAA TTAGCCTTAC AAATTGACGC CTATTTACCA
GCAGAATATA TATCAGATGA GCGCCAAAAA ATAGAAATAT ATAAGCGTAT TCGTGAATTA
GAAACTAGGG CTGATTATGA AGCCTTACAA GATGAGTTAA TAGATCGTTT TGGAGAATAT
CCTGATCAAG TTGCATACCT TTTAGAAATA GGACTTTTAA AAGCTTATCT GGACCTTGCC
TTTACTGAAT TAGTAGAAAG AAAAGGTAAT GAAATAAGCA TCCTATTTGA AAAAGCATCT
TTGAAGTATT TTTTAACTCA AGATTATTTT GAAGCACTAT CAAAAACTCA ACTTAAGGCT
AGAATTAGCG AAACAAATGG TAAGATGGAA GTTGTTTTTA ATATCAAACA TAAGAAAAAT
TATGAAATTA TTGAAGAACT TCTAAAATTT GCCGAATGTT TTATCGAGAT TAAGTCACGT
AAACCAGTAG AAGAATAA
 
Protein sequence
MNIIELFSQN KVVRTWHSGL VTNSRQLVMG FSGASKAIAI ASAYEKLSKK IMVVTATQTD 
SDKLSSDISS LIGEDNVYQF FADDVPAAEF IFSSLDKSIS RLSALRFLKD PEKNGVLITS
ISGLRLLLPN PEVFSKSQYK FEIGQECYLD KLCKNLVNLG YQKVSQVFSP GEFSQRGDIL
DIFEMTQEYP YRLEFFGDEI DGIRQFDIDT QKSLKQLESV QISPADDIIL QDADFERAKK
KLEGYLVTAS EVQRTYLSEV LSTTENHFKH SDIRRFLSIF YEKEWGILDY IPEGTPLFVD
DFQKIVDRNA KLDLEIASLL TEDLQQGKSH SSLNYFSDPY KQLRQYQPAT FFSNFHKGLG
NLKFDKLHHF TQYGMQEFFN QFPLLVDEIN RYKKSGATVL LQVDSQKGLN LLQENLKEYG
LDLIISDKND IVQKESQLIV GHLSNGFYFA DEKIVLITER EIYHRRVKRK IRRSNISNAE
RLKDYNELSV GDYVVHNVHG VGKFLGIETI EIQGIHRDYL TIQYQNADRI SIPVEQIELL
TKYVSADGKE PKINTLNDGR FKKAKQRVAK QVEDIADDLL KLYAERSQLQ GFAFSPDDNM
QNDFDNDFAY VETEDQLRSI KEIKQDMEGN RPMDRLLVGD VGFGKTEVAM RAAFKAVNDH
KQVVVLVPTT VLAQQHFENF KERFSNYPVT VDVLSRFRSK KEQTDTLKRL SKGQVDIIIG
THRLLSQDVV FSDLGLIVID EEQRFGVKHK EKLKELKTKV DVLTLTATPI PRTLHMSMLG
IRDLSVIETP PTNRYPVQTY VLETNPGLVR EAIIREIDRG GQVFYVYNKV DTIDQKVSEL
QELVPEASIG FVHGQMSEIQ LENTLIDFIN GDYDVLVATT IIETGVDISN VNTLFVENAD
HMGLSTLYQL RGRVGRSNRI AYAYLMYRPD KVLTEISEKR LDAIKGFTEL GSGFKIAMRD
LSIRGAGNIL GASQSGFIDS VGFEMYSQLL EQAIATKQGK SLIRQKGNAE LALQIDAYLP
AEYISDERQK IEIYKRIREL ETRADYEALQ DELIDRFGEY PDQVAYLLEI GLLKAYLDLA
FTELVERKGN EISILFEKAS LKYFLTQDYF EALSKTQLKA RISETNGKME VVFNIKHKKN
YEIIEELLKF AECFIEIKSR KPVEE