| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_5050 |
|---|
| Symbol | |
|---|
| ID | 3521543 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | - |
|---|
| Start bp | 5370275 |
|---|
| End bp | 5371906 |
|---|
| Gene Length | 1632 bp |
|---|
| Protein Length | 543 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 36% |
|---|
| IMG OID | 637287489 |
|---|
| Product | inner membrane protein, 60 kDa |
|---|
| Protein accession | YP_271688 |
|---|
| Protein GI | 71281074 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0706] Preprotein translocase subunit YidC |
|---|
| TIGRFAM ID | [TIGR03592] membrane protein insertase, YidC/Oxa1 family, C-terminal domain
[TIGR03593] membrane protein insertase, YidC/Oxa1 family, N-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAATCCC AACGCAGTCT ACTTTTTATT GCGCTTATGG TTGTTACCTA CTTACTGTTT
AGTCAATGGC AGCAACAAAA TGCCGTAGTT CCTGAGCAAA CAAGTATTAG CCAAAACCAG
TCAGTTGAAA ATGCCGACGC AGACTTCGTG CCTGAATCTT CAGATGCCCA AGTAAGCTCG
ATAAAATCAA CCAATACTTC TGCCAAATTA ATTACAGTGA CCACAGATAC ATTAATTTTA
AAAATTAATA GTCAAGGTGG TGATATTGTT GAAGCTAAAT TACGAAAATT TGATACTGAG
CAAGGTAACG ATATCCCTTT TACTATTTTA CAAAATGGTA ATCAAAAATA TATTGCTCAA
AGTGGTTTAA CAGGCGCTAA CGGTATTGAC CGTACAATCA AAGGCCGTCC TATATATACT
AGTGCGAAAA ACAGCTATGA ATTAGTAAAT GACAACTTAA TTGTCGATTT AGTTTTTCAT
GATGTTAGTG GCATGTCAGT GACTAAACGA TTTACTTTTA ATAAAAATAG CTACAGCGTT
AATGTTGATT ACTTAATTGA CAACAACACG GCTAACAGCG TTTCTGTACA AATGTATGGT
CAACTTAAAC AATCTACCGT AGTAGAAACT GGTGGTGGCA TGTTACCTAC CTACCGCGGT
GCTGCTTACT CAACAACAGA AGAACGTTAC GAAAAATACG ATTTTGATGA TATTGAAGAA
GCAAACTTAA ATGCAGTAAC TGCAGGCGGC TGGATTGCAA TGCTTGAACA TTACTTTGTT
TCAGCTTGGG TACCAAACGC AAAAGACAGT AACCAACTTT ATACAACGTA TAGTAATAAC
TTTGAAGCAG TTATTGGTTT TAAAGCTCCA GCTGTAATCA TTGACGCTGG TAAGCAAGGT
TCTACTTCAG CAATATTTTA TGCTGGCCCT AAAGACCAAG AAGTATTAGA GAAAATAGCA
CCAAACTTAG ACTTAACCAT AGATTACGGT TTCTTATGGA TGATCAGTCA ACCGTTATTC
TGGTTACTAC TAACGATCCA AAGTTTTGTT ACTAACTGGG GTGTAGCTAT TATTATCATC
ACCTTAATCG TTAAAGGTGG TATGTACCCA TTAACTAAAG CGCAATATAC CTCAATGGCT
AAAATGCGTG ATTTAGCACC AAAAATGGCA CAACTAAAAG AGCGTTTTGG TGATGACAGA
CAAAAAATGT CACAAGCCAC AATGGAAATG TATCGTAAAG AAAAGGTCAA CCCAGCAGGC
GGTTGTTTAC CACTAATACT ACAAATGCCA ATTTTCTTAG CACTTTACTG GGTATTCTTA
GAAAGTGTTG AATTACGCCA TGCACCTTTT GTTTTCTGGA TTCAAGATTT ATCAGCAATG
GACCCATTCT TCGTATTACC AGTACTTATG GGTATCAGTA TGTATGTAAT GCAAAAAATG
CAACCGATGA CGATTCAAGA TCCAATGCAA CAAAAAATCA TGCAATATAT GCCCGTAGTA
TTCTCAATAT TTATGGCTTG GTTCCCATCT GGTTTAGTAC TTTACTGGTT AGTAAGTAAC
TTAATTTCAA TTACACAAAT GAAAATAATA TTTGCTGGTA TTGCTAAGAA AAAAGCAGAA
AAAGCAGCAT AA
|
|---|
| Protein sequence | MESQRSLLFI ALMVVTYLLF SQWQQQNAVV PEQTSISQNQ SVENADADFV PESSDAQVSS
IKSTNTSAKL ITVTTDTLIL KINSQGGDIV EAKLRKFDTE QGNDIPFTIL QNGNQKYIAQ
SGLTGANGID RTIKGRPIYT SAKNSYELVN DNLIVDLVFH DVSGMSVTKR FTFNKNSYSV
NVDYLIDNNT ANSVSVQMYG QLKQSTVVET GGGMLPTYRG AAYSTTEERY EKYDFDDIEE
ANLNAVTAGG WIAMLEHYFV SAWVPNAKDS NQLYTTYSNN FEAVIGFKAP AVIIDAGKQG
STSAIFYAGP KDQEVLEKIA PNLDLTIDYG FLWMISQPLF WLLLTIQSFV TNWGVAIIII
TLIVKGGMYP LTKAQYTSMA KMRDLAPKMA QLKERFGDDR QKMSQATMEM YRKEKVNPAG
GCLPLILQMP IFLALYWVFL ESVELRHAPF VFWIQDLSAM DPFFVLPVLM GISMYVMQKM
QPMTIQDPMQ QKIMQYMPVV FSIFMAWFPS GLVLYWLVSN LISITQMKII FAGIAKKKAE
KAA
|
|---|
| |