Gene CPS_5017 details

Gene Information

• Locus tag: CPS_5017
• ID: 3520190
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Colwellia psychrerythraea 34H
• Kingdom: Bacteria
• Replicon accession: NC_003910
• Strand: +
• Start bp: 5332946
• End bp: 5333581
• Gene Length: 636 bp
• Protein Length: 211 aa
• Translation table: 11
• GC content: 35%
• IMG OID: 637287456
• Product: polysaccharide deacetylase family protein
• Protein accession: YP_271656
• Protein GI: 71279729
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG0726] Predicted xylanase/chitin deacetylase

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.910146
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCGAAATA AAATTATATA TTTCATACGA TCTAAGCTCT TGCCTGATAG CTTGTTTTTG 
ATCAATGGGA AAAGAGAGTC TAAATCACTT TATTTAACTT TTGACGATGG TCCTGTTCAA 
GGTGTCACTG AAGAGTTACT TGAATTACTT GCACAACATA AAGTAAAAGC TACTTTTTTT 
ATTATTGGCT CTCGCATCAG CAAATCATCG GATTTACTAA AAAAGATACA TCAACAAAAA 
CATACAATTG CAAATCATTC ATACAGCCAC CCTAATTTCA CTAAGTTATC AAGTGAAACA 
ATGCTTGAAC AAATAATCAC AACAAATGAG CTAATTAGGG CAACTACTCA ACAATGTTGT 
CGATTATTTC GCGCCCCCCA AGGCCGCTGG AGTATCAGGT TACTGTTTAA GTTATTTCGT 
TTAAAAATGA CAGCAGTACA TTGGAGTCGA GACTCTATGG ATTTTCTTAA AGAGCAACCA 
GAAAAAATTG TGAAACGTTT TATTGATGAG CCAGTAAAGA ATGGCGACAT TATATTATTT 
CATGATGATA ACTCTCGTTG TATCGAGGCG TTAAAAACCT TAATACCCCA TTGGCATTCT 
CAAGGTTTTA GTCTCAACGC ATTGGAGAAT AAATAA 

 

Protein sequence

MRNKIIYFIR SKLLPDSLFL INGKRESKSL YLTFDDGPVQ GVTEELLELL AQHKVKATFF 
IIGSRISKSS DLLKKIHQQK HTIANHSYSH PNFTKLSSET MLEQIITTNE LIRATTQQCC 
RLFRAPQGRW SIRLLFKLFR LKMTAVHWSR DSMDFLKEQP EKIVKRFIDE PVKNGDIILF 
HDDNSRCIEA LKTLIPHWHS QGFSLNALEN K