| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_4921 |
|---|
| Symbol | |
|---|
| ID | 3519180 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | + |
|---|
| Start bp | 5212076 |
|---|
| End bp | 5212951 |
|---|
| Gene Length | 876 bp |
|---|
| Protein Length | 291 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 637287360 |
|---|
| Product | LysR family substrate binding transcriptional regulator |
|---|
| Protein accession | YP_271560 |
|---|
| Protein GI | 71278222 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATGAAAG AACACAAAAA ACTTGAACGT TTAATGCTCT TTAGTGAAGT CGCTGAACAC
TTAAGTTTTA CCGCGGCAGC TGAAAAACTA AATGTTTCTC GTGGCCACCT TTCCAGTCAA
ATTAAACGTT TAGAGCAAGA TATGGAGATG GTTCTGTTGA TTCGCTCAAC ACGAAGTGTC
CGCTTAACTC CTGAAGGTGA ACGTGTTCTT ACTGGTATGA ATAAGATCCG TCATGACCTA
TTAGAATTAG AAAGAAGTGC TGAACATGAA GGCAATAAAA TAGAAGGTCG AATAAAGATT
ACCGCACCAG GGGGATTTGC TGAACGTTTT TTATTTGATA TTTTTTCACA GTTCAAACAA
TTACACCCTG CCATCGAATT TTCACTTAAT TGCAGCTATA CCCGATTTGA TTTAAACAGA
AGTGATTTTG ATTTCGCCTT TAGAGCAACC AGTGAACCGC CGCAAAACAT GGTCGCTAAA
CATTTAATGT CTTATCAACA TTGTTGCTGT GCATCCCCGA AATACTTTGA CAGCAAAGGG
GTGCCAAAAA CGCCCGCTGA CTTAATAAAT CATGAGTGCC TTAAAGGGCA AGAGCAAACT
ACCTGGCAAT TTCAACAAGA AGCGGTACAA ACACAGGGTT GGTTGGAAGT TAACGATAAT
AATATGTTAA AAGGACTCGC ATTAGCGGAT AAAGGCATTA TTAGAGTGCC TAAATATTTA
GTAGACAAAG AGGTAAAGTC AGGAAAACTT AAGACGATAT TTGAAGAGAA AATGCCAAGT
GGTTCGATGA TTTATATAAT ACACCCTCAA CGTATTCACC CATCAAAAAG AATTTCAACC
TTCTTAAATT TTACTCAGCA GTACTTTGCT AAATAA
|
|---|
| Protein sequence | MMKEHKKLER LMLFSEVAEH LSFTAAAEKL NVSRGHLSSQ IKRLEQDMEM VLLIRSTRSV
RLTPEGERVL TGMNKIRHDL LELERSAEHE GNKIEGRIKI TAPGGFAERF LFDIFSQFKQ
LHPAIEFSLN CSYTRFDLNR SDFDFAFRAT SEPPQNMVAK HLMSYQHCCC ASPKYFDSKG
VPKTPADLIN HECLKGQEQT TWQFQQEAVQ TQGWLEVNDN NMLKGLALAD KGIIRVPKYL
VDKEVKSGKL KTIFEEKMPS GSMIYIIHPQ RIHPSKRIST FLNFTQQYFA K
|
|---|
| |