| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_4805 |
|---|
| Symbol | lpdA |
|---|
| ID | 3518653 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | - |
|---|
| Start bp | 5094950 |
|---|
| End bp | 5096383 |
|---|
| Gene Length | 1434 bp |
|---|
| Protein Length | 477 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 637287244 |
|---|
| Product | dihydrolipoamide dehydrogenase |
|---|
| Protein accession | YP_271444 |
|---|
| Protein GI | 71277775 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1249] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes |
|---|
| TIGRFAM ID | [TIGR01350] dihydrolipoamide dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTAACA ATATCAAAAC TCAAGTAGTA GTATTAGGTG CAGGCCCTGG TGGTTATTCT
GCGGCATTTC GTGCAGCAGA TTTAGGTTTA GACGTAGTAT TAGTTGAAAG CCGTGAAACA
TTAGGTGGCG TTTGTTTAAA CGTTGGTTGT ATCCCATCAA AAGCATTACT TCACGTTGCT
AAAGTTATTG ATGATGCAGC TGCAATGGCT TCTCACGGTG TTACTTTCGG TAAACCTGAA
ATTGATTTAG ATAAAATCCG TGGCTGGAAA GAAAGCGTAA TTGCTCAACT TACTGGTGGT
TTAGGCAGCA TGTCTAAAGC CCGTAAAGTC GCTACAGTAT ACGGTTACGG TAAATTCACT
TCTGATAAAA CTATCGAAGT TGAAGGTAAT GACGGCGAAA AAACGACTAT TACTTTTGAT
AACGCAATTA TCGCAGCGGG TTCTTCAGTA ATTGACTTAC CATTTATCCC TAACGATGAC
CCACGTGTTA TTGATTCAAC GGGCGCACTA GAACTTAAAG ATGTTCCAGA AGAATTATTA
GTACTTGGTG GCGGTATCAT TGGCCTAGAA ATGGGTACTG TATATTCTGC TTTAGGTTCT
AATGTATCTG TTGTTGAGTT TGCTGATCAA TTAGTACCAG CAGCTGATAA AGATATCGTT
AGAGTTTATA ACAACTACAA CAAGAAAAAA TTCAACATCA TGTTGTCTAC TAAAGTTGTT
GCTGTTGAAG CAAAAGATGA TGGTTTATAC GTTACTTTTG AAGGTAAAAA AGCACCAAAA
GAACAAGTAC GTTATGACAA GATTTTAGTT GCTGTTGGCC GTAAGCCAAA TGGTCACTTA
GTTGCTGCTG ATAAAGCGGG TGTAAATGTT GATGAGCGTG GTTTCATCAA CGTAACTAAC
GAGCTTCGTA CTAACGTGCC ACACATCTTC GCTATTGGTG ATGTTGTTGG TCAACCTATG
CTTGCGCATA AAGCCGTTCA TGAAGCACAT TGTGCAGCTG AAGTTATTTC TGGTAAGAAG
CATACTTTCG AACCTCGTTG TATCCCTTCA ATTGCTTATA CTGATCCAGA AATGGCTTGG
GTTGGTGTTA CTGAATCTGA AGCGAAAGAG CAAGGTTTAA ACATTGAAAT CGCTAATTTC
CCTTGGGCTG CATCTGGCCG TGCTATCGCT TCTGCACGTA CCGAAGGTAA AACTAAGTTA
ATCTTCGAAA AAGAAACAGG TCGTATACTT GGTGGCGCTA TCGTGGGTAT CAATGCTGGC
GAAATGTTAG GCGAAATTTG TTTAGCCGTT GAAATGGGTG CTGATGCAGA AGATATTGGT
TTAACCATTC ATGCTCACCC AACGTTAAAT GAGTCAATTG GCTTAGCAGC AGAAATCTTT
GAAGGTTCAA TCACTGATTT ACCAAATGCT AAAGCAGTTA AAAAGAAAAA ATAA
|
|---|
| Protein sequence | MSNNIKTQVV VLGAGPGGYS AAFRAADLGL DVVLVESRET LGGVCLNVGC IPSKALLHVA
KVIDDAAAMA SHGVTFGKPE IDLDKIRGWK ESVIAQLTGG LGSMSKARKV ATVYGYGKFT
SDKTIEVEGN DGEKTTITFD NAIIAAGSSV IDLPFIPNDD PRVIDSTGAL ELKDVPEELL
VLGGGIIGLE MGTVYSALGS NVSVVEFADQ LVPAADKDIV RVYNNYNKKK FNIMLSTKVV
AVEAKDDGLY VTFEGKKAPK EQVRYDKILV AVGRKPNGHL VAADKAGVNV DERGFINVTN
ELRTNVPHIF AIGDVVGQPM LAHKAVHEAH CAAEVISGKK HTFEPRCIPS IAYTDPEMAW
VGVTESEAKE QGLNIEIANF PWAASGRAIA SARTEGKTKL IFEKETGRIL GGAIVGINAG
EMLGEICLAV EMGADAEDIG LTIHAHPTLN ESIGLAAEIF EGSITDLPNA KAVKKKK
|
|---|
| |