| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_4603 |
|---|
| Symbol | |
|---|
| ID | 3518978 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | - |
|---|
| Start bp | 4857644 |
|---|
| End bp | 4858471 |
|---|
| Gene Length | 828 bp |
|---|
| Protein Length | 275 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 35% |
|---|
| IMG OID | 637287042 |
|---|
| Product | mechanosensitive ion channel family protein |
|---|
| Protein accession | YP_271250 |
|---|
| Protein GI | 71278410 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0668] Small-conductance mechanosensitive channel |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAAATCA ATATAGAAAA AATCGAACAT TATATGCAAA TGCTTGGTGA GATGGGTCTG
CAATTCGGCG TACAATTTTT ATTAGCCATT GTTGTTTATT TCGTCGGTAA TTTTATTATC
AAAAGAGTGC TTAGCCTAGT AGGTAAAGGA CTAGAAAAGA AAAAGGTTGA GATTACCTTA
CATCAGTTTT TATTAAGTAT TTTAAGTACG TTATTAAAAG CGATTCAAAT TATAATTCTT
GCTTCTATGC TTGGCATTCA AACCGCGTCG TTTATTGCTA TTTTAGGTGC TGCTGGTTTA
GCAATTGGTT TAGCGTTGCA AGGTAGTTTA GCTAACTTTG CTGGTGGCGT TTTAATCTTA
TTATTCCGTC CGTTTAAAAA TGGCGATGCC ATTAAAGCGC AAGGTTATGT TGGTAGCGTT
GAAGAAATTC AAATTTTTAA TACCATCCTA AAAACATTTG ATAACCAACG TATTATTATT
CCAAATGGTT TGTTATCTAA TGGTTGTGTG ACCAATATTA ATGTTAACGG TACCCGTCGT
GTAGATATGG TATTTGGTAT TGGTTATGAC GATGATATCG CTAAAGCAAA AGCACTTTTA
CGTACAATAA TTGAAGCCGA TGAACGTGTA CTTAAAGACC AAGCCGTAGA TATTTGGGTT
GGTGAACACG GTGAAAGTTC AGTAAATTTA TTTGTTCGTC CTTGGGCGAA TGCAGAAGAT
TACTGGGGCA TTTATTTCGA TATGATGGAA AAAGTGAAAA TTGAATTCGA TAAAGCTGGT
ATCAGCATTC CATTTCCACA ACGCGATGTG CATATGCATC AAAAGTAG
|
|---|
| Protein sequence | MEINIEKIEH YMQMLGEMGL QFGVQFLLAI VVYFVGNFII KRVLSLVGKG LEKKKVEITL
HQFLLSILST LLKAIQIIIL ASMLGIQTAS FIAILGAAGL AIGLALQGSL ANFAGGVLIL
LFRPFKNGDA IKAQGYVGSV EEIQIFNTIL KTFDNQRIII PNGLLSNGCV TNINVNGTRR
VDMVFGIGYD DDIAKAKALL RTIIEADERV LKDQAVDIWV GEHGESSVNL FVRPWANAED
YWGIYFDMME KVKIEFDKAG ISIPFPQRDV HMHQK
|
|---|
| |