| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_4590 |
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| Symbol | gspE |
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| ID | 3521872 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | - |
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| Start bp | 4842881 |
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| End bp | 4844410 |
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| Gene Length | 1530 bp |
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| Protein Length | 509 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 637287029 |
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| Product | general secretion pathway protein E |
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| Protein accession | YP_271237 |
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| Protein GI | 71281400 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | [TIGR02533] general secretory pathway protein E |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCTGATG AAGTTGAAGT CACTGCGCTT GATGAGGCAG AACAAGCACA AGTGAACAGT
ACTTGGTTAT TGCCGTTTGC CTTTGCTAAG CGCCACAGTG TACTCATCTC AACCGATGAA
CAAACTGGTG GTTATATTTT GCACTGTTTG GCTGATGTTA ACTTTGATAT TGTTTTAGAA
GTTCGTCGCA TACTCAAAGC GTCTTTTGAA TTTGATTTTT TACAACTGCC CGCTTTCGAA
TTATTGCTAA CGCAAGCTTA TCAAAGAGAC TCTTCTGAAG CACAGCAAAT GATGGAAGAT
ATTGGCAATG AAGTTGATTT ATATTCACTT GCCGATGAAC TCATTGAAAG TGAAGATTTA
CTTGAAAATG AAGACGATGC GCCAATTATC AAACTGATCA ATGCCATGCT CAGCGAAGCA
ATAAAAGAAA GAGCGTCAGA TATCCATATC GAAACTTTTG AAAATACCTT ACAGATACGT
TTTCGTGTTG ATGGTGTTTT GCGAGAAGTG CTTAAACCCA ATCGTAAATT GGCGTCGTTA
CTGGTTTCAC GCATTAAAGT GATGGCAAAG CTCGACATAG CCGAAAAACG TATTCCACAA
GATGGCCGCA TTTCGTTGCG TATAGGGGGA CGTGCTGTTG ATGTGCGCGT TTCAACTATG
CCAACAGGTC ATGGTGAGCG AGTGGTATTA CGTTTATTAG ATAAAAATGC GGCCCGTTTA
GATTTGAAAC ACTTAGGTAT GACTGACACT AACCGAGTCA ATTTTTCAGC ACTTATCGAA
AAGCCTCATG GCATTATCTT AGTAACAGGT CCAACAGGCT CAGGTAAAAG TACCACGCTT
TATGCTGGAT TGACCCAGAT AGATGAGAAA GAGCGTAATA TTTTAACCTG CGAAGATCCT
ATTGAGTATG CTATTGAAGG TATAGGACAA ACTCAAGTAA ATACCAAAGT GGACATGACA
TTTGCTCGCG GTTTACGTGC CATTTTACGT CAGGATCCTG ATGTGGTGAT GGTAGGTGAA
ATTCGAGATT TAGAAACCGC GCAAATTGCG GTACAGGCAA GTTTGACTGG TCACTTGGTA
TTATCTACTT TGCATACTAA TACTGCGGCT GGTGCTATAA CCCGCATGGA AGATATGGGC
GTAGAACCTT TCCTACTGTC ATCGAGTTTA TTGGGCGTAT TGGCTCAACG TCTTGTACGT
ACCCTCTGCC CACATTGTCG TGCAAGTCAT CTGCCTGATG ACGAAGAAAG GCAATTATTA
GCATTGCCAG ATGATAATGA TTCAGTGATT TATCGTGCTG TTGGTTGTGC GGAATGCAGT
TTTAAAGGCT ATCGAGGTCG AGTGGGTATT CATGAATTGT TACCTGTGGA TGAAAAAGTA
CGCGAACTTA TTCATAATGG TCAAGGTGAG CAGGCTATTG AAAAATATGT ACGATATTCC
AGTGCCAGTA TTCGTCGGGA TGGCTTTGAT AAAGTTATGC TTGGACAAAC CACTTTAGAG
GAGGTCTTAC GGGTTACTCG TGAAGATTAA
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| Protein sequence | MSDEVEVTAL DEAEQAQVNS TWLLPFAFAK RHSVLISTDE QTGGYILHCL ADVNFDIVLE
VRRILKASFE FDFLQLPAFE LLLTQAYQRD SSEAQQMMED IGNEVDLYSL ADELIESEDL
LENEDDAPII KLINAMLSEA IKERASDIHI ETFENTLQIR FRVDGVLREV LKPNRKLASL
LVSRIKVMAK LDIAEKRIPQ DGRISLRIGG RAVDVRVSTM PTGHGERVVL RLLDKNAARL
DLKHLGMTDT NRVNFSALIE KPHGIILVTG PTGSGKSTTL YAGLTQIDEK ERNILTCEDP
IEYAIEGIGQ TQVNTKVDMT FARGLRAILR QDPDVVMVGE IRDLETAQIA VQASLTGHLV
LSTLHTNTAA GAITRMEDMG VEPFLLSSSL LGVLAQRLVR TLCPHCRASH LPDDEERQLL
ALPDDNDSVI YRAVGCAECS FKGYRGRVGI HELLPVDEKV RELIHNGQGE QAIEKYVRYS
SASIRRDGFD KVMLGQTTLE EVLRVTRED
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