| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_4589 |
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| Symbol | gspF |
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| ID | 3522238 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | - |
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| Start bp | 4841581 |
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| End bp | 4842822 |
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| Gene Length | 1242 bp |
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| Protein Length | 413 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 637287028 |
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| Product | general secretion pathway protein F |
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| Protein accession | YP_271236 |
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| Protein GI | 71281766 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1459] Type II secretory pathway, component PulF |
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| TIGRFAM ID | [TIGR02120] general secretion pathway protein F |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAGCAT TTGAATACCA AGCGGTAGAT AGTCGCGGTA AAACTAAAAA AGGCGTTATC
GAAGGTGATA CTGCTAGGCA AGTGCGCGGT TTATTGCGCG AGCAAGGCTT AATGCCAACC
GCTGTTACTG CAACATTAGC GAGTCATAAA AAATCGAATG ATAAAAAAAG TTTGTCGGCA
GGCTTTAGCC AAAGTGGTGG CGGTAAAGTC TCTGCTGCAG AGTTAGCGCT TATCACTCGT
CAATTGGCAA CCTTAATTGA ATCAGGATTG CCATTAGAAG AGTCGTTAAT GGCGGTTGCA
GAGCAATGTG AAAAGAACCG TATTAAAAGT ATGATCATGG GTGTTCGCAC CAAAGTGACT
GAAGGCTACG GGTTATCTGA AAGCATGGCA GAATATCCTA AAGCGTTTAA TCGTTTGTAT
CGGTCTATGG TTGCCGCAGG CGAAAAGTCA GGTCATCTTG ATAAAGTACT TAATCGCTTG
GCTGATTATA CTGAGAAACG TCAAGAGATG CGCTCACAAC TCATCCAGGC ACTTGTTTAC
CCTATTATAA TGACGGTTGT CGCTGTTGGC GTAATTGCTA TTTTGTTAAC GGCCGTAGTA
CCCAAAATTG TCGGTCAGTT TGAACACATG GGTGAAAATT TACCTGGCAC TACGCAATTT
TTGATTGCCA GCAGTGATTT TCTTCGGGAT TATGGCCTAG TACTGGTAAT ACTATTTGCA
GCAGTAGTAT TGTTGTTTTC ACAGTTATTA AAAAAGCCTA ATTTTGAAAT GGCATTTCAT
CAGTATTTAT TGCAGATTCC TGGTATTGGT AAAGTAGCAC GAGGAATTAA CACTGCTCGC
TTTGCCCGTA CATTAAGTAT TTTGACAGCA AGTGCAGTTC CCTTGTTAGA AAGTATGAAA
ATATCAGGTG AAGTACTTGA TAACTTATAT ATTAAAAAAC AAGTGAAAGC ATCGACCGAC
AAAGTACGTG AGGGCTCGAG TTTACGTGTG TCATTGGAGC AAACTAAGTT GTTTCCACCT
ATGATGTTGC ACATGATAGC AAGTGGCGAA AAAAGTGGCC AATTAGAGCA TATGTTAGGT
CGCGCTGCAG ATAACCAAGA TAGAGAGTTT GATGCTTTAG TGAGTATTAC ATTGAAGGCA
TTTGAACCAG CATTGATGGT TTGCATGGCA GGCGTTGTAC TTTTTATTGT GATGGCCATT
TTAGAACCCA TTCTGCAACT TAATAGCCTA GTGGGCGGCT AA
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| Protein sequence | MAAFEYQAVD SRGKTKKGVI EGDTARQVRG LLREQGLMPT AVTATLASHK KSNDKKSLSA
GFSQSGGGKV SAAELALITR QLATLIESGL PLEESLMAVA EQCEKNRIKS MIMGVRTKVT
EGYGLSESMA EYPKAFNRLY RSMVAAGEKS GHLDKVLNRL ADYTEKRQEM RSQLIQALVY
PIIMTVVAVG VIAILLTAVV PKIVGQFEHM GENLPGTTQF LIASSDFLRD YGLVLVILFA
AVVLLFSQLL KKPNFEMAFH QYLLQIPGIG KVARGINTAR FARTLSILTA SAVPLLESMK
ISGEVLDNLY IKKQVKASTD KVREGSSLRV SLEQTKLFPP MMLHMIASGE KSGQLEHMLG
RAADNQDREF DALVSITLKA FEPALMVCMA GVVLFIVMAI LEPILQLNSL VGG
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