| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_4573 |
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| Symbol | mshE |
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| ID | 3519432 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | - |
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| Start bp | 4825939 |
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| End bp | 4827651 |
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| Gene Length | 1713 bp |
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| Protein Length | 570 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 637287013 |
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| Product | MSHA biogenesis protein MshE |
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| Protein accession | YP_271221 |
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| Protein GI | 71279074 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAGCTC CCAAATTAAA GATGCGTTTA GGTGACTTAT TGGTTGATAA AGATATCATT
TCCAATGATC AACTCATGCA AGCGCTATCT AGTCAAAAGC AAACGGGCCG TAAACTCGGT
GATACATTAA TTGAGCTAAA TTACTTATCT GAAAGACAAT TATTAGAGTT TTTGGCGCAG
CAACTCAATG TGCCGTTTAT GGATATTTCT CAATTTAAAA TATCACCGGC TGTTTCGAGT
TTATTACCAG AAGTTCATGC TAGGCGTTTA AGAGCTTTAA TTATTGAAGA TAGAGGCGCT
TCAGTATTAT TAGGGATGAG TGATCCTGCG GATTTAAGTG GCTTAGATCA GTTAGAGCGA
ATGTTGTCGC CTAAGCGCAT TGAGCTTGCG GTAGTCATGG AATCTCAGAT TTTTGATGCC
TTCGATAGTT TATATCGTCG TACTGCTGAA ATTGAATCTT TTGCTAGCCA ACTAGAAGAA
GAGTATGAAG AATCATCTAG TTTTGACCTC GCAACAACCT TTCTTGATGA AGGTGGCGAT
GCGACCGTAG GTAAGTTACT GCAATCCGTG TTTGAAGATG CGGTACAAAT GCGAGCATCG
GATATTCATA TTGAACCAGA AGAACATCAA TTACGTATTC GTCAACGTAT TGATGGTGTG
TTACAAGAAA AGATTCTCAA AGAAAATAAA ATAGCTTCAG CCATGGTGTT GCGTCTTAAG
TTAATGGCGG GGCTTGATAT ATCAGAAAAG CGTATTCCAC AAGATGGTCG TTTCAATTTA
GATATTAGTG GGCATAACAT CGATGTTCGT ATGTCTACTA TGCCTGTTCA ATATGGTGAA
TCAGTTGTTA TGCGTTTATT GGACCAATCT GCGGGTTTGT TATCACTTGA GCAAACAGGG
ATGCCGGCAG ATATTGTTAA ACGTATACGC CTGCAAATTC ATCGCCCCCA TGGAATGGTT
TTAGTTACAG GACCAACAGG TAGTGGTAAA ACAACGACAT TATATGCAGC TTTGAGCGAA
CTTAATGAAG CCAGTAAAAA AATTATCACA GTGGAAGACC CTGTTGAGTA TCGTTTGCCC
CGTATTAACC AAGTACAGAT TAATACTAAG ATAGATTTAA CCTTTTCTAG CGTTTTACGA
ACAGCACTTC GTCAAGATCC AGATATCATG ATGGTTGGTG AAATGCGTGA TCAAGAAACG
GTTGAAATTG GCTTGCGAGG TGCCATAACA GGTCATCTAG TCTTATCAAC CTTGCATACC
AACGATGCTA TCACGAGTGC TTTACGCCTG ATTGATATGG GCGCTGCGGG ATTTTTAGTG
GGTAGTGCAT TACGTGCGGT TATAGCTCAA CGGCTTGTTC GAAGAGTTTG TGACTCATGT
GCTATTGAAT ACCAAGCGGA TGAACAGGAA CTCTTTTGGC TAACGAATTT AGCAGGTGAG
AGGGCGAAAA ATATTCAGTT TATGCAAGGT AAAGGTTGCC AAACATGCCA CTATACTGGT
TATAAAGGTC GAATTGGTGT CTTTGAAATA CTTGAAATGA ATGAAGGTAT GATGGCTGCT
TTAAAGCGTA ATGATAGTGA GTTGTTTGCG AAACTATCTA AAGAAAACCC CAGTTTTACA
CCACTGGCAA AAGCAGCATT TGATTATGCG GCAACAGGTA TTACCACGGT CGAAGAAGTA
TTACGTTTAG TTGAAACTAT TGATATTAAT TAA
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| Protein sequence | MAAPKLKMRL GDLLVDKDII SNDQLMQALS SQKQTGRKLG DTLIELNYLS ERQLLEFLAQ
QLNVPFMDIS QFKISPAVSS LLPEVHARRL RALIIEDRGA SVLLGMSDPA DLSGLDQLER
MLSPKRIELA VVMESQIFDA FDSLYRRTAE IESFASQLEE EYEESSSFDL ATTFLDEGGD
ATVGKLLQSV FEDAVQMRAS DIHIEPEEHQ LRIRQRIDGV LQEKILKENK IASAMVLRLK
LMAGLDISEK RIPQDGRFNL DISGHNIDVR MSTMPVQYGE SVVMRLLDQS AGLLSLEQTG
MPADIVKRIR LQIHRPHGMV LVTGPTGSGK TTTLYAALSE LNEASKKIIT VEDPVEYRLP
RINQVQINTK IDLTFSSVLR TALRQDPDIM MVGEMRDQET VEIGLRGAIT GHLVLSTLHT
NDAITSALRL IDMGAAGFLV GSALRAVIAQ RLVRRVCDSC AIEYQADEQE LFWLTNLAGE
RAKNIQFMQG KGCQTCHYTG YKGRIGVFEI LEMNEGMMAA LKRNDSELFA KLSKENPSFT
PLAKAAFDYA ATGITTVEEV LRLVETIDIN
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