Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPS_4543 |
Symbol | rpoN |
ID | 3522419 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Colwellia psychrerythraea 34H |
Kingdom | Bacteria |
Replicon accession | NC_003910 |
Strand | + |
Start bp | 4794480 |
End bp | 4795997 |
Gene Length | 1518 bp |
Protein Length | 505 aa |
Translation table | 11 |
GC content | 38% |
IMG OID | 637286983 |
Product | RNA polymerase sigma-54 factor |
Protein accession | YP_271191 |
Protein GI | 71281947 |
COG category | [K] Transcription |
COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGCCCTA CACTACAGCT CCGTATTGGA CAACACTTAA CAATGACTCC ACAATTGCAA CAAGCTATTA AGCTGTTGCA ATTGTCTACG TTAGAGTTAC AACAAGAAAT TCAAGAAGTT TTAGAGAGCA ATCCATTACT TGAACTTGAT GAAAAAGCTC AAAGTGATAA TTCAAGTGAA CAAAATAATC TTGAAGAAGC CTTTTCATCC AATACTAATG AAGAAAAAAC GGATCAACCT GCGGGCGATG GTAGTGAAGA ACAGCAGGCC AGTATTGACG AAATCAGTAC TACTGAGGCG ATGGAAAAAA GTGATATACC AGAAGAACTA AATATAGATA CTACTTGGGA AGAAAGCTAC AGTGCTGGGG TATCAAATAC TGGCGCAGTA AGTAGCCCTG CTGATGACTA CACCTATCAG GGTGAAACCA CTGATTCCAT TCAAGATCAT TTATTATGGC AAATGGAATT AACCCCTTTC AGCGATACTG ATAAAACCAT CGCAATTGCT ATTATAGAAG CAGTCGATGA CGCCGGTTAT TTAACTGTAT CACCAGAAGA TATCTTAGAG AGTGTTGGCA CTGAAGGGCT CGAGCTTGAT GAAGTAGAAG CCGTATTAAA ACGTATTAAT ATGTTTGATC CTATTGGTGT CGCAGCTCGC TCCATTCCTG ATTGCTTACT TATTCAATTA AATCAATTTA GTGCTGATAC CCCTTACCTG AAAGAAAGTA AATTAATAAT CAACGACCAT ATCGATCTAC TTGGTAATCG AGACTATCGC CAGTTAATGC GTAAAACCAA ATTAAAAGAA GATCAGCTAC GTGAAGTAAT GCGTTTAATT CAAAGCTTGA ACCCTCGTCC GGGTGATGCG GTAATTAAAG GCGATGACCA GTATGTTATT CCAGATGTTT CTGTTGAGAA AAAAAATGGC CGTTGGGTCG TTGAATTAAA TTCTGATACT GCACCTAAAT TGTCGATTAA TAAACAGTAT GCGGCAATGT CTAAAACAAT GAAGTCGTCA ACTGATGATG GACAATTTAT TAGATCCAAC TTACAAGAAG CTAAATGGTT TATTAAGAGT TTAGAATCTC GCAATGACAC ACTACTTAAA GTGTCCAATT GTATTGTTCA ACGCCAGCAA GGTTTTTTAG AACATGGTGC TGAAGCCATG AGACCTATGG TACTAAACGA TATAGCTGAA GCTGTTGATA TGCACGAATC CACCATCTCA CGTGTTACAA CACAAAAGTA TATGCACACG CCAAGAGGCA TCTTTGAACT CAAGTACTTC TTCTCTAGTC ATGTCAGTAC AGAGAATGGT GGTGAATGTT CATCTACAGC AATTCGTTCT TTGATTAAAA AACTTATCTT AGCGGAAACA CCTGCTAAAC CGTTAAGTGA TAGTAAAATG GCTAACTTAT TAGCTGAGCA GGGAATAAAA GTGGCACGAC GTACAATTGC TAAATATCGA GAATCATTAG CGATACCACC GTCAAATCAA CGTAAGAGTT TACTTTAG
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Protein sequence | MRPTLQLRIG QHLTMTPQLQ QAIKLLQLST LELQQEIQEV LESNPLLELD EKAQSDNSSE QNNLEEAFSS NTNEEKTDQP AGDGSEEQQA SIDEISTTEA MEKSDIPEEL NIDTTWEESY SAGVSNTGAV SSPADDYTYQ GETTDSIQDH LLWQMELTPF SDTDKTIAIA IIEAVDDAGY LTVSPEDILE SVGTEGLELD EVEAVLKRIN MFDPIGVAAR SIPDCLLIQL NQFSADTPYL KESKLIINDH IDLLGNRDYR QLMRKTKLKE DQLREVMRLI QSLNPRPGDA VIKGDDQYVI PDVSVEKKNG RWVVELNSDT APKLSINKQY AAMSKTMKSS TDDGQFIRSN LQEAKWFIKS LESRNDTLLK VSNCIVQRQQ GFLEHGAEAM RPMVLNDIAE AVDMHESTIS RVTTQKYMHT PRGIFELKYF FSSHVSTENG GECSSTAIRS LIKKLILAET PAKPLSDSKM ANLLAEQGIK VARRTIAKYR ESLAIPPSNQ RKSLL
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