| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_4493 |
|---|
| Symbol | dapD |
|---|
| ID | 3522578 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | - |
|---|
| Start bp | 4737491 |
|---|
| End bp | 4738240 |
|---|
| Gene Length | 750 bp |
|---|
| Protein Length | 249 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 637286933 |
|---|
| Product | 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase |
|---|
| Protein accession | YP_271141 |
|---|
| Protein GI | 71282105 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2171] Tetrahydrodipicolinate N-succinyltransferase |
|---|
| TIGRFAM ID | [TIGR00965] 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACTGGC AAGATGTATT AGCACAGTTA GAATCAGGTA GTTTACGAGC GGCAAACCAA
GATGATGCCG GTAACTGGCA TGCCAACATT GAAGTGAAAC AAGGTATTTT AGCTGCTTTT
AAAGCGGGTA AAAACATTGC TTTTGATGAT AATTACCAAG GTTTTGTTGA TAAACACAAC
TTACCAGCTC GTCAGTTTAC ACCTGAAGAT GGTGTTCGTT TAGTACCAGG AGGTTCATCA
GTACGCGCAG GTGCTTACGT TGCCGAAGGC GTTATCATCA TGCCACCAGC TTATATCAAT
GTTGGCGCTT TTGTTGATAG TGGCACTATG GTTGATAGCC ATGCTTTGAT TGGTTCATGT
GCACAAGTTG GTAAAAATGT ACATATTTCA GCAGCAGTTC AAATTGGTGG CGTATTAGAG
CCAATAGGCG CTAGCCCGGT AATCATTGAA GATGGTGCTT TTTTAAGTGC TGGTGTCGTT
GTCGTTGAAG GCATTGTTGT TAAAAAAGGT GCGGTATTAG CACCAGGCGT ATCTCTATCA
AAATCAGTAC CTGTTTATGA TTGTGTTAAT CAAGTTATGC GAGAAAAAGG TGCTGAAATT
CCAGAACGTG CAGTTGTTGT ACCTGGTACC CGTCCTGTTA AAGGTGAATG GGCTCAAGAG
CAAGGTCTAA GTATGGCCTG TGCGCTTATC GTTAAATATC GCGATGAACA AAGCGATGCT
TCTTTAGAAT TAGAATCAAT TCTAAGATAA
|
|---|
| Protein sequence | MNWQDVLAQL ESGSLRAANQ DDAGNWHANI EVKQGILAAF KAGKNIAFDD NYQGFVDKHN
LPARQFTPED GVRLVPGGSS VRAGAYVAEG VIIMPPAYIN VGAFVDSGTM VDSHALIGSC
AQVGKNVHIS AAVQIGGVLE PIGASPVIIE DGAFLSAGVV VVEGIVVKKG AVLAPGVSLS
KSVPVYDCVN QVMREKGAEI PERAVVVPGT RPVKGEWAQE QGLSMACALI VKYRDEQSDA
SLELESILR
|
|---|
| |