| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_4470 |
|---|
| Symbol | murE |
|---|
| ID | 3519095 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | - |
|---|
| Start bp | 4708731 |
|---|
| End bp | 4710323 |
|---|
| Gene Length | 1593 bp |
|---|
| Protein Length | 530 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 637286910 |
|---|
| Product | UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase |
|---|
| Protein accession | YP_271118 |
|---|
| Protein GI | 71278293 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0769] UDP-N-acetylmuramyl tripeptide synthase |
|---|
| TIGRFAM ID | [TIGR01085] UDP-N-acetylmuramyl-tripeptide synthetase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCTAAAC CTGCTAGCCA AAGTATTTTT ACATATCTGA GTGTGTTTTC CATTGAACTA
CCTAGCTCGA TTAATTTAAT GGGCTTTTGC GGTGATCTTC ACAACGATAG TCGAGCGATT
GTTGATGGTG ACATTTTCTG CGCTATTATT GGTCATGATC AAGACGGTCG CCAATATATT
GAGCAAGCAA TAAAACAGGG GGCTAAGCTA GTAGTTGCTG AGTGCGAGAA TATTACCGAG
CATGGTGATG TTACTTTTGC GTCAAGCGAT AACACGGTAG CGATTGTTAA GTTCTATCAA
CTTAACCAGC ATTTATTTAC CCTAACAAAA AATTACTATC AAGCGCCGCA AGATAATATG
ACGCTAGTGG GCATTACCGG CACTAATGGT AAAACTACCA CCAGTCAGTT ATTAGCTCAA
ATGCTTAGTG CTTACCAAAA AACGTGTGCT GTTATTGGTA CTAATGGTGC AGGTAGTATC
GATAATTTAC ATCCTATAGA AAATACTACT CCCGGTGCTT GTGAGTTACA CCAATTATTT
AAGCGTTTTA GCGATGAACA ATTTAGTTAT GTAGCGATGG AAGTGTCTTC TCATGCGCTA
TCACAAAATC GCGTGCAAGC AGATTTATTC GATATAGCGA TTTTTACTAA TTTAAGCAGA
GATCATCTTG ATTACCATGG TTCAATGGCA AGTTATGGTG AGTCGAAAAA GCAAATTTTT
AGTGCGGATA GTAACCAAGT TGCAGTAGTG AACTTTGATG ATCAACAAGC AAAAAAATGG
CTAGAGAATT GGCCGAAGCA ACAAACTCTT TGGTTATATA GCCGTGAAAC CGATAATAGT
AATTATAAAA ACTTTGTAAC CGCTAAAGGT ATTAATCACC ATAGACATGG TGTCTCATTT
ACTTTAATGA GTCATTTAGG CGATATCGAT ATTACCAGTC CATTATTGGG CGACTTCAAT
ATTGATAATT TATTGGCGGC TATCAGTGTG CTGCTTATCC AAGGCATACC ATTAAGCGAG
ATCCCTCATT TAGTCACTCA AGTAAGCGCA ATTGCTGGGC GAATGGAAGC AACCAGTGCT
AAAAATTTAG CAACTGCCGT GGTCGATTAT GCTCACACGC CTGATGCGTT GGAAAAAGCG
CTGCAAGCCT GTCGTCAACA TTGTGCAGGT GAGCTTTATG TTGTGTTTGG CTGTGGCGGT
GATAGAGATA AAGGTAAAAG GCCCTTAATG GCACAAGCGG CAGAAAAATA TGCTGACCAT
TTGGTCGTTA CTAATGATAA CCCGCGTAGT GAAGATGCCC AGTTGATAGC AAATGATATT
GTTGCCGGTT TTACCTGTCC AGATGCAGAG CAAATATCGA TTATTTTAGA AAGAGAACAA
GCGGTATTGA AAACTCTGAA TAAAGCAAAA CCTGGCGATA TAGTACTGTT GGCAGGTAAA
GGCCACGAAG ATTACGTCAT TGTGGCTAAG CATGATGAAA AGGGCGGAAT CGTTGGTACC
CAGAAATTAG CTTACAACGA ACGTTTAGTC GTGAAAAATT TTTATCAAAA GCACGCTGGT
TTGGCCGTAT TGTCTGATGA GGCAAACTTA TGA
|
|---|
| Protein sequence | MPKPASQSIF TYLSVFSIEL PSSINLMGFC GDLHNDSRAI VDGDIFCAII GHDQDGRQYI
EQAIKQGAKL VVAECENITE HGDVTFASSD NTVAIVKFYQ LNQHLFTLTK NYYQAPQDNM
TLVGITGTNG KTTTSQLLAQ MLSAYQKTCA VIGTNGAGSI DNLHPIENTT PGACELHQLF
KRFSDEQFSY VAMEVSSHAL SQNRVQADLF DIAIFTNLSR DHLDYHGSMA SYGESKKQIF
SADSNQVAVV NFDDQQAKKW LENWPKQQTL WLYSRETDNS NYKNFVTAKG INHHRHGVSF
TLMSHLGDID ITSPLLGDFN IDNLLAAISV LLIQGIPLSE IPHLVTQVSA IAGRMEATSA
KNLATAVVDY AHTPDALEKA LQACRQHCAG ELYVVFGCGG DRDKGKRPLM AQAAEKYADH
LVVTNDNPRS EDAQLIANDI VAGFTCPDAE QISIILEREQ AVLKTLNKAK PGDIVLLAGK
GHEDYVIVAK HDEKGGIVGT QKLAYNERLV VKNFYQKHAG LAVLSDEANL
|
|---|
| |