| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_4449 |
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| Symbol | pilD |
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| ID | 3518628 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | + |
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| Start bp | 4687011 |
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| End bp | 4687916 |
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| Gene Length | 906 bp |
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| Protein Length | 301 aa |
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| Translation table | 11 |
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| GC content | 36% |
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| IMG OID | 637286889 |
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| Product | type 4 prepilin-like proteins leader peptide processing enzyme PilD |
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| Protein accession | YP_271097 |
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| Protein GI | 71278916 |
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| COG category | [N] Cell motility
[O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1989] Type II secretory pathway, prepilin signal peptidase PulO and related peptidases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.255527 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGTTAGATA AATTTTATTC TCTCTTTAAT CACATAAACA TGTTATTTCA AGAACTCCCT
ACCTTCTTCT ATATTACGGT TGCCCTAATT TCATTGGCCA TAGGTAGCTT TCTTAATGTT
GTCATTTATC GTACCCCTAA AATGATGGAA TATACTTGGT ATCATGACTG CCGAGAGTTT
CTAGCCGATG AGGTTGCTAA TGTTAAGGCA AAAAGACTTA CTAAAATCAC CCTATCTAAA
CCTGACTCTA CCTGCCCTAA CTGTGATCAT AAAATTCGAT TTTATGAAAA CATCCCTGTA
TTAAGTTGGT TATTACTAAA GGGGAAGTGT AGCCAGTGCA CTAATAATAT TTCAGCTCGT
TATCCTATAA TCGAACTTTC TACCATGGTG CTAAGTCTTA TTGTTGCTCA ACATTTTGGT
GCAACAATAT CTACATTGTG GGTTTTGTTA CTCACTTGGT GTTTGATTAC ACTTACCATG
ATAGATTTTG ATCACATGTT ATTACCTGAT CAAATTACAC TGCCACTTTT ATGGTTAGGT
TTACTAATAA ACATAAATGG AACTTTTATC CCATTACCCG ATGCTGTCAT TGGAGCAGCC
GTTGGTTACA TGAGCCTATT CTCTGTCTTT TGGCTCTTTA AAGTAATAAC AGGTAAAGAG
GGCATGGGTT ATGGCGACTT TAAATTGTTC GCTGTTTTTG GTGCTTGGAT CGGTTGGCAA
TTACTTCCTA TTCTAATTTT AATGGCATCA GTTGTTGGCG CAATTGTTGG TATTACTTTA
ATGTTATTCA AAAACCATCA AAGAGAGCAA GGCATCCCTT TTGGCCCATA TTTAGCAGTA
GCTGGTTGGA TAACTTTATT ATGGGGTGAT GGTATTTGGT CATGGTATTT ACAAAAAATT
CTTTAA
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| Protein sequence | MLDKFYSLFN HINMLFQELP TFFYITVALI SLAIGSFLNV VIYRTPKMME YTWYHDCREF
LADEVANVKA KRLTKITLSK PDSTCPNCDH KIRFYENIPV LSWLLLKGKC SQCTNNISAR
YPIIELSTMV LSLIVAQHFG ATISTLWVLL LTWCLITLTM IDFDHMLLPD QITLPLLWLG
LLININGTFI PLPDAVIGAA VGYMSLFSVF WLFKVITGKE GMGYGDFKLF AVFGAWIGWQ
LLPILILMAS VVGAIVGITL MLFKNHQREQ GIPFGPYLAV AGWITLLWGD GIWSWYLQKI
L
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