Gene CPS_4447 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCPS_4447 
SymbolpilB 
ID3522068 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameColwellia psychrerythraea 34H 
KingdomBacteria 
Replicon accessionNC_003910 
Strand
Start bp4683825 
End bp4685525 
Gene Length1701 bp 
Protein Length566 aa 
Translation table11 
GC content39% 
IMG OID637286887 
Producttype IV pilus biogenesis protein PilB 
Protein accessionYP_271095 
Protein GI71281596 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB 
TIGRFAM ID[TIGR02538] type IV-A pilus assembly ATPase PilB 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAGGAA ATCACCAACA AGCTAGTCTG CTATCGGCAT TATCAAAGCA GAACCTTATT 
CCTTTAGAAT CAATAGATGA TATTACGGCT GATTTCATCG GTAAAAAAAT ACCTTTCATT
CGTTTTTTGA TTGAAGACAA AAGTATTGAT GGAAATAGTA TTGCTAAAGT ACTTTCTAAA
AGCTTTGGCC ACCCACTAAT TCAACTTAGT AACTTCGATA CCAGCTTGGT ACCTGAAGGT
GTTCGTAATG AAAAACTGAT CACTAAACAT AATGCATTGC CACTATATTT ACGTGGCAAA
GTACTGTTTA TTGCCATGTC AGACCCGACT AATTTAGATG CCTTAGAAGA AATACAGTTT
AATACCGGTT ACAGCACTGA GCTAGTATTA TGTGATGAGA AGAGCTTACA AACTTGTATT
GAAAAAGTAC TCGAAGATGA AAGTGCTGCA TTAGATATAA GTGACATCGA TGCAGATGAG
TTAGCGGGTA TTGATGTTGA AGAGTCAAGA AAAGAAGACG CTAACGCTAA CGGTGAAGAT
GATGCACCTA TCGTTGTTTT CATCAATAAA ATATTACTCG ATGCTATAAA GAAAGGGGCT
TCAGATTTAC ATTTTGAACC TTATGAAAAG TCATTTCGTA TTCGCTTTCG TATTGATGGT
ATTTTATCTG AAATAGCTAG ACCACCAGTA AGCCTCTCTT CAAGAATGGC AGCCCGCTTG
AAAGTGATGT CTAAATTGGA TATTGCCGAA CGTCGTGTTC CACAAGATGG TCGAATTAAG
TTGGCACTAT CCAAGAAAAA GTCGATCGAT TTTCGTGTCA GTACTTTACC CACCATGTGG
GGTGAAAAAG TCGTAATGCG CATATTAGAT TCATCAAGTG CTATGCTGGG TATAGATATG
CTGGGTTATG AACCCGCTCA GAAAAAAATA TACATGGAAG CATTAGAACA ACCGCAAGGT
ATGATTTTAG TTACTGGACC AACAGGTTCA GGTAAAACGG TATCGCTTTA TACCGGATTA
AATATATTAA ACACACAAGA ACGTAATATA TCTACAGCGG AAGACCCTGT CGAAATTAAC
CTTGAAGGCA TCAACCAAGT ACAAATCAAT AATCGTGCCG GTTTAACTTT CCCAAGTGCA
TTGCGCTCGT TTTTACGACA AGATCCAGAT ATTGTCATGG TGGGGGAAAT TCGGGATTTA
GAAACCGCTG AAATTTCGAT AAAAGCCGCA CAAACTGGCC ACTTAGTATT ATCAACCCTG
CATACTAACT CTGCTGCTGA AACGCTTACT CGTTTACTTA ATATGGGGGT TCCTTCCTAT
AATGTTGCCA GCTCTGTCTC TATTATTATT GCTCAACGTT TGGCAAGACG ATTATGCCCG
CAGTGTAAGG AGGAAGAGCC TCTTTCTGAA ATGCTATTAG CCGAACAAGG TTTTCCTGCT
GATAAATTAG CTGACATAAA GTTATTTAAA CCTATAGGCT GTACTCATTG CACTGGAGGC
TATAAAGGCC GCGTGGGTAT TTACGAAGTG ATTAAAATTA GCCCGACTAT TGCTTCTATT
ATCATGGAAG GTGGCAACTC TCTTGATATA GCGAAGCAAT GCCAAAAGGA GGGGTATAAC
AACTTGCGTC AATCAGGTTT ATTAAAAGCA ATGAGCGGTA TGACAAGTTT AGAAGAAATT
AACCGAGTAA CTAGCGCTTA A
 
Protein sequence
MKGNHQQASL LSALSKQNLI PLESIDDITA DFIGKKIPFI RFLIEDKSID GNSIAKVLSK 
SFGHPLIQLS NFDTSLVPEG VRNEKLITKH NALPLYLRGK VLFIAMSDPT NLDALEEIQF
NTGYSTELVL CDEKSLQTCI EKVLEDESAA LDISDIDADE LAGIDVEESR KEDANANGED
DAPIVVFINK ILLDAIKKGA SDLHFEPYEK SFRIRFRIDG ILSEIARPPV SLSSRMAARL
KVMSKLDIAE RRVPQDGRIK LALSKKKSID FRVSTLPTMW GEKVVMRILD SSSAMLGIDM
LGYEPAQKKI YMEALEQPQG MILVTGPTGS GKTVSLYTGL NILNTQERNI STAEDPVEIN
LEGINQVQIN NRAGLTFPSA LRSFLRQDPD IVMVGEIRDL ETAEISIKAA QTGHLVLSTL
HTNSAAETLT RLLNMGVPSY NVASSVSIII AQRLARRLCP QCKEEEPLSE MLLAEQGFPA
DKLADIKLFK PIGCTHCTGG YKGRVGIYEV IKISPTIASI IMEGGNSLDI AKQCQKEGYN
NLRQSGLLKA MSGMTSLEEI NRVTSA