| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_4417 |
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| Symbol | |
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| ID | 3522748 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | + |
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| Start bp | 4654159 |
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| End bp | 4656651 |
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| Gene Length | 2493 bp |
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| Protein Length | 830 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 637286858 |
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| Product | putative ABC transporter, permease protein |
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| Protein accession | YP_271066 |
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| Protein GI | 71282275 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0577] ABC-type antimicrobial peptide transport system, permease component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.56334 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTTTAT TCAAAAAGTC CTTATATCAA GGAATAACAC GGGTCTTTTC ACTGCCCCGC
CTAAGCGTGC CACTAATTTT AACACTTGGC TTAACATTAG GCGCAGTATT AAGTGTTATT
TCAATTTCAT CGACCTTGTT GTATCAACCG CTGCAAGGCA TAGAAAATGA GGATTCGTTG
CAAACCTTTG ATTATCGTTT TAAAATGTCA GATACCTTAA GTGTTTCCTA TTGGAACATG
AATCGTTTAG TCGACTTTAG TGAGCAATTT ACTGATTTAG GTGAATGGGC TGGTGTTGCA
CCTTCAGAGC AAGATGTGGT GGTAAATAAC ACTACGTTTG CAACGACGCG TTATGATGCG
TCAAGTAACA TTCTTTCAGT GTTAGGTAGT CAGCTGTTAC TAGGCGATGA TGTCACTATT
GAGTCAACAG AAAAGTATGT TTGGATTTCT CAAAGCCTTT GGGAGAATGC TTTTGCCAGC
GTTAAATCTG TCATTGGTAA ACAAGTAACA ATTACCAATA AAAATTATAT CATTGCTGGT
GTTATTGAAG ACGTAATGGC GATAAAGAGT ACCCGTGCAG TTTTACCACA GCAAGTCTGG
TTTATCGCCA ATTTAGCCAA AGTTAAGACG CAAACTGACT CAGTTGGTAA TATTAGCAAC
GATATTGATA CCCTGATTCT TAAATCGGCT AATGGCCAAG CAAAACTACC ATCACTAGCC
CAAGTAGATG CTTGGTTAGA AGATTATGTC ACTCGAAATG TCGATGGCGA GCAAGTGCAA
ATGTTTTTGG ACTTCATGAA TAGTACAAAA AAAGAAGCTA AAGGCAGTAA TTATCGTAGC
AACATGTTAG GTGAAACTGA AAGTCTACTC ATCGCATTAT TTACCGCCGT TATAGGGCTG
TTATTAATGG CTACGCTAAA CCTACTAAAT TTATTCATCG CGCATTATCA AGGAAGAACT
AAAGAATTCG CAATTCAAAT AAGCTTAGGT GCAAGCTTAA CAAAAGTGAG ATTATTGGTA
TTACTTGAGA ACCTACCGAG TTTTGTTTTA GCGGCCGTAA CGGGTTTATT AGTGACTGGT
TGGGCGATAA AAAGCTTACC GCTAATCGCG GGTGATAGTT TACCTATGAT AGATGCCATT
GCTATAGATA GCACCACCAT ACTTGCCTCA GTAGCCATTA TATTAGCGCT AAGCGTACTA
TTTAGTTCCC TCGCATTGGT TGATATTGAT AAACATGCAC TAGGCAATAA CTTAAATAGT
AGTGGTAAAG GAATACAGGC ACAAAGTAAT CAATGGCTGA GCCGAGTATT AATGGTTTTA
CAACTTTCAA TTGCCTCGAT ATTACTAACC GCTTCAGTAA TGATAGCGAT GCAAAGCTAT
CAAGCAGTAT ACCAAGATAC CGGTTATGAC ATAGGCAATA GTTATGAAAT TGGCATGACG
GTTAGCGATG AAGAATATAT TACTCAATTA AATACCTTTG ACTCCTATGG CAAAAGCGAA
GCTAAACAAT TACTTGATGG TGTGTCAAAC TTGATAGAAC AACAGGTAAG CAATAGCCGA
GTTATTATCC CTAACTATGG CCCTTTGTCT GATTCTTTAC GTGTAAATGC CTTTCGTGAT
GAAGAATCAG GAGAGCGCGT TATTCACCAA ATAAAGACCT TAGGGGCAAA GTATTTTTCA
ACCTTTAATA TCCCTATGTT AGCTGGAGCG AATGTCAGCC AAGCCCAAAT TGATAACGAT
GAAGATAGAA TTGTTATCGA TGAAAATATG GCAAAATCCT TATTTTCAAA CTTAAGCTAC
CAAGAGGTTA TCGGTAAAAC TATTCAAATG AGTCCCGATG GTTCAACACC ACCATCAATT
GTTACCGGGG TGGTAGCTAA TACTTTAAGC CAAACCGGTA TTGCAGAGAC CTTAGGTTTA
CCTTCGGTAT ATTCTCATCG AGTAAACCCA GGTTCTACCT TACAATTTAC TGTGATGTTA
CCCGCAGGAA AAACCATTAC ACCAGCGATG TTAGAAAGCG AAATTAAACG TCAATTCCCA
CGTTTAACGA ACTTAACCGT ACAATCATTA ATAGATATTG GGCAGAGACA AACATTAAAT
CAACGTCTTA GTTTATGGAT AGTGCTTGCC ATGACGGGTT TAACGTTATT TCTTGCTGCT
ATTGGTGTAG CTGGTCTAAC ACAAATGACC ACAAACCATC GAAAATATGA ACTTGCTGTG
CGTATGGCAA CGGGCGCCAA ACAAGCTAAA TTGGTCAACT TTATTTTAAA AGATGCTTTG
TCTATGTTAG TGGTTGGATT AGGTTTAGGT TTTATTATTT CTGTTTTTGG TTATCAACAA
GTCTCACAAA GCTTAGAAAT GTTACCTGAC TTTAACTGGT TTGCAATGGC CTCATTAGAT
GCCGCGTTAG TGATTATTGT TATCTTGTCG GTAATTATGC CCGCATGGCG AGTGATAAGC
AGTGACCCAA TGCAGGCCTT GCGAGAAGAG TAA
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| Protein sequence | MSLFKKSLYQ GITRVFSLPR LSVPLILTLG LTLGAVLSVI SISSTLLYQP LQGIENEDSL
QTFDYRFKMS DTLSVSYWNM NRLVDFSEQF TDLGEWAGVA PSEQDVVVNN TTFATTRYDA
SSNILSVLGS QLLLGDDVTI ESTEKYVWIS QSLWENAFAS VKSVIGKQVT ITNKNYIIAG
VIEDVMAIKS TRAVLPQQVW FIANLAKVKT QTDSVGNISN DIDTLILKSA NGQAKLPSLA
QVDAWLEDYV TRNVDGEQVQ MFLDFMNSTK KEAKGSNYRS NMLGETESLL IALFTAVIGL
LLMATLNLLN LFIAHYQGRT KEFAIQISLG ASLTKVRLLV LLENLPSFVL AAVTGLLVTG
WAIKSLPLIA GDSLPMIDAI AIDSTTILAS VAIILALSVL FSSLALVDID KHALGNNLNS
SGKGIQAQSN QWLSRVLMVL QLSIASILLT ASVMIAMQSY QAVYQDTGYD IGNSYEIGMT
VSDEEYITQL NTFDSYGKSE AKQLLDGVSN LIEQQVSNSR VIIPNYGPLS DSLRVNAFRD
EESGERVIHQ IKTLGAKYFS TFNIPMLAGA NVSQAQIDND EDRIVIDENM AKSLFSNLSY
QEVIGKTIQM SPDGSTPPSI VTGVVANTLS QTGIAETLGL PSVYSHRVNP GSTLQFTVML
PAGKTITPAM LESEIKRQFP RLTNLTVQSL IDIGQRQTLN QRLSLWIVLA MTGLTLFLAA
IGVAGLTQMT TNHRKYELAV RMATGAKQAK LVNFILKDAL SMLVVGLGLG FIISVFGYQQ
VSQSLEMLPD FNWFAMASLD AALVIIVILS VIMPAWRVIS SDPMQALREE
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