Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPS_4219 |
Symbol | nirTB |
ID | 3523274 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Colwellia psychrerythraea 34H |
Kingdom | Bacteria |
Replicon accession | NC_003910 |
Strand | - |
Start bp | 4441249 |
End bp | 4443060 |
Gene Length | 1812 bp |
Protein Length | 603 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 637286660 |
Product | denitrification system component NirT/cytochrome c552 |
Protein accession | YP_270869 |
Protein GI | 71278993 |
COG category | [C] Energy production and conversion |
COG ID | [COG3005] Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.50309 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCAAATA ACACTTTCTT AAAACCAAGT TTTTGGTCAC GCCGATTAAT CCTCGGCACT ACTGTCTCAG GCGCTGTTAT CTTCTTTATC GTAGGTATTG TCTTCTGGGG TGGTTTCAAT ACTGCCATGG AAGCAACGAA TACCACCGAG TTTTGTATCG GTTGTCACGA AATGGAAGCC AACGTTTACC AAGAATATAA ACCATCAATA CATTTTTCTA ACCGTACCGG CGTAAGAGCT GGCTGTCCTG ACTGTCACGT TCCTAAACCT TGGATACATA AAGTCGTTCG TAAAATTCAA GCGTCAAAAG AAGTTTTTTC TTGGTTAACA GGCAAGCTTG ATACCAAAGA AAAATTTAAT GAGCACAGAT TTGAATTAGC GCAAAGTGTT TGGCATGCCA TGAAATCAAC TGACTCGAGA GAGTGTCGTA ACTGTCACAA TTTTGAATCT ATGAATCCTG AATTCCAAAA GCCACGTGCA CGTAAACAAC ATTTAAATGC TTTTGAAACA GGACAAACCT GTATCGATTG CCATAAAGGT ATTGCGCATC ATAACGTACG TGACAAGCTT TCTGATGAAG AATTAGAAAA GCTAGAAGCG CCAAATCCAG ACTATATTCG TGAAGTACCA CAAGCTTATC GCGAAGGTTT AGCACGTGTA GAAGCGAAAG AAGCTGCAGC TGCTGCGAAA GTCAAAGAAG AAAAAATGGC TGAAAAAGCA AAAACTGAAC AGAAAATAGC CTCTGCTGTT GAAGAAGCAT TAGCTAATGC TGGTTCTAGC AAAGCGACTA CAAGTAAATC ATCGAAAGGG TCTGTAAGTG CTGCACCTAG TGCAAGTAAT ATTAATGTTG ATTGGGGCAA AGCAAGCTCG AAAGATATTG GTGTTTTCTA TCCTGGTACA GCGTCTATTG AATGGATCCT AGGTCGTAAG CATGGTGGTA AACGTGCCTT TACTAAAGGC GACCGTTGTA TTGAATGTCA TGGTGAAGAG ATTGCGGATA TTGGTAACAA TATCGTTACT GGTGAAAGTG AGAAGAAACT AGAACCTAAT GTTATCCCTG GAAAACGTGG CCATATCGAT GTAACGATTG ATTCAACGTA CGATGCTGAA AATCTATATT TGAGATTTAG TTGGGCTGAT GGTGAACATG CAGCTGTTCC ATTTGTTGAT GGCGGTAAAA TGGACCCAGA AAACCCAATG AAATTAGCCT TTATGCTAGC AACTGATGAT GTTGAATACG CAGATAGAGC AGGCTGTTGG GGTACGTGTC ATGCCGATGC TAACTCTATG CCGTTTGCAC CAGATGCTGA TACATTGAAA GGTAGTGATT TAGCTAAGCG TCTTAAGTTC GATACGGGTT CAGGTACAGG TGTTACTAAG TATCTTAAAG AATCGCGTAC TAAGTTAGAG CTTAAAGGAC GTGGCGGTAA AGCGCTAGGT GGTTGGGATA AACTTAAAGA TCAAAGCGAC ATTGATGCGG CACAAAAGTC TAATCAATTT ATGGATGTTA TTCGCTATAA ATCAGGCACC AAAGAAGTAG AAGATGGTCA GATTTTAGCA GAACGCGACA TGCATAAAGG CGTTGGCGCA GCTGTTGAAG CTTCACTTAA AAATGGTACT TGGTCGGTAG TTGTTAAGCG TAAGCTTAAA TCTGACAAAG CGGGTGATGT GAGTATTGAA ACAGGTAAAG TATATAACTT TGGCTTTGCA ATACATGACG ATTATTCAAG CGCACGTTAT CACCATGTTT CATTTGGTTA TAAACTAGCA CTTGATAATG CTGATGCAGA ACTTAATGCT ACTAAGCAGT AA
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Protein sequence | MANNTFLKPS FWSRRLILGT TVSGAVIFFI VGIVFWGGFN TAMEATNTTE FCIGCHEMEA NVYQEYKPSI HFSNRTGVRA GCPDCHVPKP WIHKVVRKIQ ASKEVFSWLT GKLDTKEKFN EHRFELAQSV WHAMKSTDSR ECRNCHNFES MNPEFQKPRA RKQHLNAFET GQTCIDCHKG IAHHNVRDKL SDEELEKLEA PNPDYIREVP QAYREGLARV EAKEAAAAAK VKEEKMAEKA KTEQKIASAV EEALANAGSS KATTSKSSKG SVSAAPSASN INVDWGKASS KDIGVFYPGT ASIEWILGRK HGGKRAFTKG DRCIECHGEE IADIGNNIVT GESEKKLEPN VIPGKRGHID VTIDSTYDAE NLYLRFSWAD GEHAAVPFVD GGKMDPENPM KLAFMLATDD VEYADRAGCW GTCHADANSM PFAPDADTLK GSDLAKRLKF DTGSGTGVTK YLKESRTKLE LKGRGGKALG GWDKLKDQSD IDAAQKSNQF MDVIRYKSGT KEVEDGQILA ERDMHKGVGA AVEASLKNGT WSVVVKRKLK SDKAGDVSIE TGKVYNFGFA IHDDYSSARY HHVSFGYKLA LDNADAELNA TKQ
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