Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPS_4181 |
Symbol | tolC |
ID | 3518923 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Colwellia psychrerythraea 34H |
Kingdom | Bacteria |
Replicon accession | NC_003910 |
Strand | + |
Start bp | 4400599 |
End bp | 4401948 |
Gene Length | 1350 bp |
Protein Length | 449 aa |
Translation table | 11 |
GC content | 39% |
IMG OID | 637286623 |
Product | outer membrane channel protein |
Protein accession | YP_270832 |
Protein GI | 71278472 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATAAAA CACTAAGCAC ACTAATTATA GCGATAACTA CTGCTATTAG TAGTACACAA GCACAGGCTG ATGATTTACT TACCGTTTAT CAACAGGCTT TATTAAACGA TCCTGTGGTA CTTAAATCAC AAGCTCAGTT TATGATAGTA AAAGAAGATA TAGTACAAGC ACGCTCTGCT TTATTACCAC AAATTTCTGC TAATGGTGGC TACTCTATAG GTGAACAAGA GTTTGTCGGC ACTGATAACA CTTCAATTAT CAATCAAGAG TCAGACAGCT TAACGTATGG CGCTAGCTTA AATATGCAGC TTTATCATCA CGATAGCTGG TTACGTTTAA ATAATGCAGA AAAAGCAGCC CATCAAAGTG ATTTAACTTA TCAAGTAGCA AAGCAAGATT TAATTACTCG CGTTGCTAAG GCTTATTTTG ATTTACTTAG CACTAAAGAT GATCTCGTTT TTGCTACCGC TGAAAAAGAT GCCATTGCTC GTCAACTTGA GCAAACTAAG CAACGCTTTT CAGTTGGGTT AACCGCTATT ACTGATGTAT ATGAAGCACA AGCACAATTT GATAGTGCTG TTACCGAAGA GATTCGTGCG GAAAATGCGA TTTTCCAAGC CGAAGAAGAA CTACGAGTAA TAACGAATAG CTACCCTAAA AACGTTAGTG TATTAAATAC TCAACGTTTC AGTACTAGTA CTCCGGTGCC AAATAGCGCT GATGAGTGGC AAGTCACTGC AGAAGCGAAA AACCTCGACT TAATTACCGC TAAAGTAGGC ATAGATATCG CGCAAGATAA TATCGATATT GCCCGCGCTG GTCATTATCC TACGCTAGAC TTTGGTGCAA ACTATAATGG CAAGGATGAA GAGCAAACGA TTGGAAGTGC GGCATCCGCA GACTTACCTG GCGTTAATGG TTACTCGATA GGCGTACAGT TAAATGTTCC TATTTATTCA GGTGGCGCTA TTCAAAGTTC AGTGCGTAAA GCACAAAATA GCTTTGTATT TGCTAGCCAA GATTTATCTT TAACACACCG TAGCGTAGTT CGCACAACCC GTAATGCTTA CAATACGGTA ATTGCTGCTA TTTCGGCTAT CAAAGCATTT GAACAATCGG TATTAAGTGC TCAAAAAGCT CTTGAAGCGA CTGAAGCTGG TTTTGAAGTG GGTACTCGTA CTATTGTTGA TGTATTAGAT AGCACGCGTA ATTTATATAA CGCTAAACGT AATTTATCAT CAACGCGTTA TGCTTATATC CAAAACGTTT TATTATTAAA ACGTGCTGCA GGTACAATCA CTGATCAAGA TATAAATGCT ATTAACTCTG GTTTGATGGT CGCTAATTAG
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Protein sequence | MNKTLSTLII AITTAISSTQ AQADDLLTVY QQALLNDPVV LKSQAQFMIV KEDIVQARSA LLPQISANGG YSIGEQEFVG TDNTSIINQE SDSLTYGASL NMQLYHHDSW LRLNNAEKAA HQSDLTYQVA KQDLITRVAK AYFDLLSTKD DLVFATAEKD AIARQLEQTK QRFSVGLTAI TDVYEAQAQF DSAVTEEIRA ENAIFQAEEE LRVITNSYPK NVSVLNTQRF STSTPVPNSA DEWQVTAEAK NLDLITAKVG IDIAQDNIDI ARAGHYPTLD FGANYNGKDE EQTIGSAASA DLPGVNGYSI GVQLNVPIYS GGAIQSSVRK AQNSFVFASQ DLSLTHRSVV RTTRNAYNTV IAAISAIKAF EQSVLSAQKA LEATEAGFEV GTRTIVDVLD STRNLYNAKR NLSSTRYAYI QNVLLLKRAA GTITDQDINA INSGLMVAN
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