Gene CPS_4181 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCPS_4181 
SymboltolC 
ID3518923 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameColwellia psychrerythraea 34H 
KingdomBacteria 
Replicon accessionNC_003910 
Strand
Start bp4400599 
End bp4401948 
Gene Length1350 bp 
Protein Length449 aa 
Translation table11 
GC content39% 
IMG OID637286623 
Productouter membrane channel protein 
Protein accessionYP_270832 
Protein GI71278472 
COG category[M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1538] Outer membrane protein 
TIGRFAM ID[TIGR01844] type I secretion outer membrane protein, TolC family 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATAAAA CACTAAGCAC ACTAATTATA GCGATAACTA CTGCTATTAG TAGTACACAA 
GCACAGGCTG ATGATTTACT TACCGTTTAT CAACAGGCTT TATTAAACGA TCCTGTGGTA
CTTAAATCAC AAGCTCAGTT TATGATAGTA AAAGAAGATA TAGTACAAGC ACGCTCTGCT
TTATTACCAC AAATTTCTGC TAATGGTGGC TACTCTATAG GTGAACAAGA GTTTGTCGGC
ACTGATAACA CTTCAATTAT CAATCAAGAG TCAGACAGCT TAACGTATGG CGCTAGCTTA
AATATGCAGC TTTATCATCA CGATAGCTGG TTACGTTTAA ATAATGCAGA AAAAGCAGCC
CATCAAAGTG ATTTAACTTA TCAAGTAGCA AAGCAAGATT TAATTACTCG CGTTGCTAAG
GCTTATTTTG ATTTACTTAG CACTAAAGAT GATCTCGTTT TTGCTACCGC TGAAAAAGAT
GCCATTGCTC GTCAACTTGA GCAAACTAAG CAACGCTTTT CAGTTGGGTT AACCGCTATT
ACTGATGTAT ATGAAGCACA AGCACAATTT GATAGTGCTG TTACCGAAGA GATTCGTGCG
GAAAATGCGA TTTTCCAAGC CGAAGAAGAA CTACGAGTAA TAACGAATAG CTACCCTAAA
AACGTTAGTG TATTAAATAC TCAACGTTTC AGTACTAGTA CTCCGGTGCC AAATAGCGCT
GATGAGTGGC AAGTCACTGC AGAAGCGAAA AACCTCGACT TAATTACCGC TAAAGTAGGC
ATAGATATCG CGCAAGATAA TATCGATATT GCCCGCGCTG GTCATTATCC TACGCTAGAC
TTTGGTGCAA ACTATAATGG CAAGGATGAA GAGCAAACGA TTGGAAGTGC GGCATCCGCA
GACTTACCTG GCGTTAATGG TTACTCGATA GGCGTACAGT TAAATGTTCC TATTTATTCA
GGTGGCGCTA TTCAAAGTTC AGTGCGTAAA GCACAAAATA GCTTTGTATT TGCTAGCCAA
GATTTATCTT TAACACACCG TAGCGTAGTT CGCACAACCC GTAATGCTTA CAATACGGTA
ATTGCTGCTA TTTCGGCTAT CAAAGCATTT GAACAATCGG TATTAAGTGC TCAAAAAGCT
CTTGAAGCGA CTGAAGCTGG TTTTGAAGTG GGTACTCGTA CTATTGTTGA TGTATTAGAT
AGCACGCGTA ATTTATATAA CGCTAAACGT AATTTATCAT CAACGCGTTA TGCTTATATC
CAAAACGTTT TATTATTAAA ACGTGCTGCA GGTACAATCA CTGATCAAGA TATAAATGCT
ATTAACTCTG GTTTGATGGT CGCTAATTAG
 
Protein sequence
MNKTLSTLII AITTAISSTQ AQADDLLTVY QQALLNDPVV LKSQAQFMIV KEDIVQARSA 
LLPQISANGG YSIGEQEFVG TDNTSIINQE SDSLTYGASL NMQLYHHDSW LRLNNAEKAA
HQSDLTYQVA KQDLITRVAK AYFDLLSTKD DLVFATAEKD AIARQLEQTK QRFSVGLTAI
TDVYEAQAQF DSAVTEEIRA ENAIFQAEEE LRVITNSYPK NVSVLNTQRF STSTPVPNSA
DEWQVTAEAK NLDLITAKVG IDIAQDNIDI ARAGHYPTLD FGANYNGKDE EQTIGSAASA
DLPGVNGYSI GVQLNVPIYS GGAIQSSVRK AQNSFVFASQ DLSLTHRSVV RTTRNAYNTV
IAAISAIKAF EQSVLSAQKA LEATEAGFEV GTRTIVDVLD STRNLYNAKR NLSSTRYAYI
QNVLLLKRAA GTITDQDINA INSGLMVAN