| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_4120 |
|---|
| Symbol | recO |
|---|
| ID | 3520361 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | - |
|---|
| Start bp | 4336301 |
|---|
| End bp | 4337011 |
|---|
| Gene Length | 711 bp |
|---|
| Protein Length | 236 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 36% |
|---|
| IMG OID | 637286563 |
|---|
| Product | recombination protein O |
|---|
| Protein accession | YP_270775 |
|---|
| Protein GI | 71279899 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1381] Recombinational DNA repair protein (RecF pathway) |
|---|
| TIGRFAM ID | [TIGR00613] DNA repair protein RecO |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.138831 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATTGAAC AAAACGCATT TGTTTTACAT AGTCGCCCGT ACCGGGAAAA CCAGCAGTTA
GTTGATTTAT TAACAGAGCA AGATGGTAAG GTGACGGCTT TAGTATATGT TGGTCAATCT
AAGCGTTCTA TAAAAAAAGG CTTAATTCAG CCTTTTTTAC CGTTAAAACT AACATTGAAA
GGTCAGGGTA ATGTTAAGTA TATTACTCAA ATAGACTCAA TTTCAAAGTC ATATTCGCTG
GTAAAGTATA GCCTGTTTAG CTCTTTTTAT ATCAATGAAT TATTGATTCG TTTATTAACA
GAGCAAATTG CTTGTCAGCA CTTATTTTCT CAATATCAAA CAACTTTGAC AGCCTTAGCT
CAAGGCGAAG AAATTGCCCC GCAATTACGT TTATTTGAAT TAGCGCTGCT TGAAGAGTTG
GGATTGTCAT TTGACTTTAG CCCTGTATTT GAGCACGATG TTAATTACTT TCATTATATC
GCCGAGCAAG GCTTTGTTCC TGTATATGAT CCTTTTCCAA AAAACAGCAC TCAATGCTTC
GATAAAACCC ATTTACAAGC GATTGCCCAG CGGGGATCTC TATACCAAAA TGGAATGTCT
GAAGACGTTA GTTATACTTT CAAGTTACTA ATGAGACAGG TTATCAACCA GTTGTTAGGG
AATAAGCCAT TAAATAGTCG TAAACTTTTT GCAAACAAAG CATACAGTTG A
|
|---|
| Protein sequence | MIEQNAFVLH SRPYRENQQL VDLLTEQDGK VTALVYVGQS KRSIKKGLIQ PFLPLKLTLK
GQGNVKYITQ IDSISKSYSL VKYSLFSSFY INELLIRLLT EQIACQHLFS QYQTTLTALA
QGEEIAPQLR LFELALLEEL GLSFDFSPVF EHDVNYFHYI AEQGFVPVYD PFPKNSTQCF
DKTHLQAIAQ RGSLYQNGMS EDVSYTFKLL MRQVINQLLG NKPLNSRKLF ANKAYS
|
|---|
| |