| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_3924 |
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| Symbol | |
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| ID | 3519569 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | - |
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| Start bp | 4097525 |
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| End bp | 4100785 |
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| Gene Length | 3261 bp |
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| Protein Length | 1086 aa |
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| Translation table | 11 |
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| GC content | 35% |
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| IMG OID | 637286370 |
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| Product | sensory box protein |
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| Protein accession | YP_270582 |
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| Protein GI | 71277969 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAAACAGT TATTCAACCC CGCTATAAAT TTAATGAACA ATCTGAGTTA CCCTCGTAAA
TTAATTGTAC TTGGTGGACT TTCTCTTCTT TCCTTATTGA TTGTTTCAAT TTCTTTATTA
GTCTATTTGT CTGAGTCAAT TAGCACCGCT AATCAGCAGT TGGACGGCTT AAAGCAGACA
CAAAAAACAT CAAGATTAAT TCAATCACTT CAACAACACC GAGGAATGTC TGCGGCTGTT
ATTGCAGGTG TTAATGACAG TACTGAAAAA CAGATGTCAG TGAATAAGCA AGTTGTTAAC
AATTTCTTAA AAGTTAGCAA TAACTTGCCT TCAGAGTTAA AGCAAGTAGC CAAATGGTCT
ACAATTGTTG AGCAATGGCA ATATTTAGAT GCTAATGGAA TGACGTTAGC ACTTAATGAA
AGTTTTAATT TACATACAGA ATTAATTCAC AATGTAAACT CCCTACAACT GCAAGTGGCT
GACTATTATT ATTTACTTGT AATGGATGAT CTTGATTCTT ATTATTTAAC AAATAGTTTT
TTATTCACCA TACCCATTAC TTTAGAATTA CTTGGCCAGG CACGTGCTGT TGGTGTTTCA
TATCTGGGTA ATAAGGAAGT AAAATTTAGA GGGGAAATGC TATCACTCTT ATCAAAGACT
ATTGTGCCTC TTGATGTCTT TAAAGAGAAT GTGGACAAAG TTAAGAGAGA ATTGATTTCG
GATGGAGAAA GTCTTTCCGC TCAGGAGCTA ATTCAATCAA TTGAGAGCCA TATCAAATTT
ACCTTAGAAG GGATTTTAGC TGATACCACT TCTTTGAGTT CTCTTGAGCT TTATAATCAA
TCTACTTCAG TTATTGATGT CGGTTATCAG TTTTTAGATA ATTCACTTTC TTTTACCTTA
AGCACTTTAC TTCGCAGTCG AGTTAAACAA GCAAACACTC AATTAATTGT AAGTATAGGC
TTTTCGTCAG CACTCTTTCT TATAGTACTG TACTTTATAA TAGGGCTGCA TTTATCAACA
ATTAGAAGCA TTAACTCTCT AACTAAAGTT ACCGGTAAGT TTTATGGTGG TGATCTTGAT
GCTCGTGTAA CGCTTGATAC TCATGATGAG CTCAATAATA TAGCGCTTGG ATTCAATGAA
ATGGCGACAT CCTTTCAAAA TCTAATGATT GATAAAGAAG AAATAAGCTC AAGACTACGC
GCCATTATTG ATAATTCACC AATAGGAATT TGGTTTACAG GAATAGATGG TCGTTATCAT
TTCGTCAATA AGACATTTTG TAACTTAGCC GGAATAAAAG AAGAAGATAT GCTAAATACT
CCTTCATCTA ATTTAGCTGA GTTATTGGGC GATGAAATAG CACATCATTG CTTAGATTCC
GATAAAGCGG CTTTAGCACA AGATTCTCCT CATGTTTCTT TTGAAACTAT TCCCCGTTCA
AATGCCAAAC CATACATTCT TGAAATTACC AAAGTGAAAT TGAAAAATGC ACAAGGTGAA
GTTGTTGGTT TAATTGGTAT CAGCAAAGAT ATAACAAATA AACGTCAGCA GGAAGAAGAT
TTAAAACTGG CAGACATTGT CTATCAAAAT AGCTCTGAAG CGATGATGAT CACCGATAGT
AAGAATGAGA TTATTGCGAT TAATCCCGCT TTATCTGAGA TTACTGGTTA TAGCTCCAGC
GAATTAATCG GAAAAAATCC TAATGTATTT AGTTCTGGAA AGCAAAACCC AGAATTCTAT
CAATTAATGT GGGAAGAAAT AAAGTTAACC GGTACATGGC AAGGTGAAAT TTGGAATACT
AAGAAAAATG GTAAGGAGTA CCCTGAATGG CTTTCAATTA GCACCATTTA TGATGATTAT
GGCAACGTAT TTAGACGGAT TGCATTATTT TCAGATATAA CAGAAAAGAA AAAGAAAGAT
GCATTGATAT TAAGACAAGC TAAGTATGAC AGTTTGACTA ACTTACCCAA TCGAATAATG
TTTATTGATA GGTTGGAACA AGAAATTAAG GTATCTCATC GTAAAAATCA AAAGTTCGCT
CTAATTTTTA TTGATCTAGA TAACTTCAAA AAAATAAATG ACACTCGGGG TCATGTCTAT
GGTGATGCAC TACTTATTGA GGCCGGAAAA CGCATTACTC ATTGTATTCG AGAAGTCGAC
ACTGTTGCGC GATTAGGTGG TGATGAGTTT ACTATTCTTT TGTCTGACAT AGCCGATATA
CATAATGTTG AATCAATTTG TCAGAAAGTC TTACAGACTT TAAGTGAGCC TTTCTTTATT
TCTAAAATGT ATACCTATAT CTCCGCTAGT TTAGGGGTCA CCATCTATCC AAACGATGCA
AGCAGCACTT TGGAGCTATT AAAAAATGCT GATCAAGCAA TGTATCTTGC TAAGAACCTT
GGACGAAATA GATTTTGCTA TTTTACCGCC TCAATGCAGG AGGAAGCACT AGATCACTTA
GAATTAATTA ACGACTTGCG TAAAGCCATT AGTTTGAATC AACTTGAGGT CTTTTATCAA
CCCATTGTTG AACTACAAAC AGGTGTTATT CGCAAAGCAG AAGCCCTGTT GCGATGGAAA
CATCCAGTGC GAGGCATGGT GAGTCCTGCA GAATTTATTC CACTGGCAGA AGAGTCTGGA
TTAATCATTG AAATAGGTGA TTGGGTATTC AAGCAAACCG TTCAACATAT TAATACATGC
AAAGACCAGC TTGGTTTAGA TATACAAATC AGTGTCAATA AATCACCGGT ACAATTTAGA
GAATCGATAG ACCAATTAGA TTGGCTAGCT TACCTTGCTG AAAATCAATT ACCTGGTGAA
AACATTGTTA TTGAAATAAC AGAAGGTCTA TTAATGAATA ATAATACAAG CACAATGGAG
CGACTTTCTA AGTTCAGGTC TGCTGGTATT GGCTTGTCTA TGGATGATTT TGGAACAGGT
TATTCATCAC TATCATACTT GAAAAAGTTT GCACTTGATT ATCTTAAAAT TGACCAATCG
TTTACAAGAA ATATAGCGCC AGGCTCTGAG GATATGATTT TGTCTGAAGC TATTATCACC
ATGGCTCAAA AGTTAGGATT GAAAGTTATA GCAGAAGGTA TCGAAACAAA AGAACAGATG
GAGTTACTCA TTGGTGCAGG CTGTGATTAT GGTCAAGGAT ATTATTTCTC AAGGCCTATA
CCAGCAGAAG ATTTTTTACA GTTATTGGCT TCAGATTCTG GTGACCTAGG CATGAAATTA
AAGGTTGCCA GTGGAGGGTA A
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| Protein sequence | MKQLFNPAIN LMNNLSYPRK LIVLGGLSLL SLLIVSISLL VYLSESISTA NQQLDGLKQT
QKTSRLIQSL QQHRGMSAAV IAGVNDSTEK QMSVNKQVVN NFLKVSNNLP SELKQVAKWS
TIVEQWQYLD ANGMTLALNE SFNLHTELIH NVNSLQLQVA DYYYLLVMDD LDSYYLTNSF
LFTIPITLEL LGQARAVGVS YLGNKEVKFR GEMLSLLSKT IVPLDVFKEN VDKVKRELIS
DGESLSAQEL IQSIESHIKF TLEGILADTT SLSSLELYNQ STSVIDVGYQ FLDNSLSFTL
STLLRSRVKQ ANTQLIVSIG FSSALFLIVL YFIIGLHLST IRSINSLTKV TGKFYGGDLD
ARVTLDTHDE LNNIALGFNE MATSFQNLMI DKEEISSRLR AIIDNSPIGI WFTGIDGRYH
FVNKTFCNLA GIKEEDMLNT PSSNLAELLG DEIAHHCLDS DKAALAQDSP HVSFETIPRS
NAKPYILEIT KVKLKNAQGE VVGLIGISKD ITNKRQQEED LKLADIVYQN SSEAMMITDS
KNEIIAINPA LSEITGYSSS ELIGKNPNVF SSGKQNPEFY QLMWEEIKLT GTWQGEIWNT
KKNGKEYPEW LSISTIYDDY GNVFRRIALF SDITEKKKKD ALILRQAKYD SLTNLPNRIM
FIDRLEQEIK VSHRKNQKFA LIFIDLDNFK KINDTRGHVY GDALLIEAGK RITHCIREVD
TVARLGGDEF TILLSDIADI HNVESICQKV LQTLSEPFFI SKMYTYISAS LGVTIYPNDA
SSTLELLKNA DQAMYLAKNL GRNRFCYFTA SMQEEALDHL ELINDLRKAI SLNQLEVFYQ
PIVELQTGVI RKAEALLRWK HPVRGMVSPA EFIPLAEESG LIIEIGDWVF KQTVQHINTC
KDQLGLDIQI SVNKSPVQFR ESIDQLDWLA YLAENQLPGE NIVIEITEGL LMNNNTSTME
RLSKFRSAGI GLSMDDFGTG YSSLSYLKKF ALDYLKIDQS FTRNIAPGSE DMILSEAIIT
MAQKLGLKVI AEGIETKEQM ELLIGAGCDY GQGYYFSRPI PAEDFLQLLA SDSGDLGMKL
KVASGG
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