Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPS_3923 |
Symbol | |
ID | 3520125 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Colwellia psychrerythraea 34H |
Kingdom | Bacteria |
Replicon accession | NC_003910 |
Strand | - |
Start bp | 4096525 |
End bp | 4097418 |
Gene Length | 894 bp |
Protein Length | 297 aa |
Translation table | 11 |
GC content | 36% |
IMG OID | 637286369 |
Product | sensory box protein |
Protein accession | YP_270581 |
Protein GI | 71279665 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2199] FOG: GGDEF domain [COG2202] FOG: PAS/PAC domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATATTAC CTGAATATAA TGAAACAGAT TTTATGCAAG CCGTTATCAA TGCGGCGCCA ACGCCTATTT TTTATAAAGA TGCACAAGGT CGATATTTAG GATGCAATAA AGCCTTTGAA GAATATATAG GGTTAAACCG TGAGCAATTA ATCGGTAAAA GTGTCTTAGA ACTCTTTGAT GATGAGCTAG CTAGAACTTA CTTTGAAGCA GACAATGCGC TTTTTGAGAG AAAAGGTACG CAAATTTATG AAGCTAAGGT GGAGTATGCT GATGGTACAA CTCACGATGT TATGTTTCAC AAGGCTTATT TTCACGCCGA AGGTATCGAA GGCATCGTAG GTTCAATACT TGATATTACT GAGCGAAAAA AAGCTGAAAA ATCACTAGAA CAACTGGCAT TAAGCGATAG CTTAACGGGG TTAGATAATA GATACTCGTT AATGAAAAGT TTAAAACACT CACTGTTACG CCAGCATCGA GAAAACTTTA CCTTGGCATT TTTGATGTTA GATTTGGATG GGTTTAAACA GATTAATGAT AACTATGGTC ACCCTGTAGG AGATGCTCTC TTAATAGAAG TAGCCAACAA GTTAAAGAAT CACTTTCGAG AAAGTGATGT CATTGCTAGG GTTGGCGGTG ATGAATTTTC TGTAATACTA GAGAATATTC ATTCTACCGA GTCGTTAATA GTATTAGCAA ATAATATCTT AGCTGAATTT CTTAAACCTT TTGTTATTGA TAATAACAAG TTCACCATAG GGATTAGCAT TGGTATTGCG ACATCATCAT TTAGCGAATG CTCATCTGAA GACATTATTA AACATGCAGA TGCAGCACTA TACCAAGTAA AAAATAGTGG TAAAGGGAGT TATCATTTAA CGGTAGTCAA TTAG
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Protein sequence | MILPEYNETD FMQAVINAAP TPIFYKDAQG RYLGCNKAFE EYIGLNREQL IGKSVLELFD DELARTYFEA DNALFERKGT QIYEAKVEYA DGTTHDVMFH KAYFHAEGIE GIVGSILDIT ERKKAEKSLE QLALSDSLTG LDNRYSLMKS LKHSLLRQHR ENFTLAFLML DLDGFKQIND NYGHPVGDAL LIEVANKLKN HFRESDVIAR VGGDEFSVIL ENIHSTESLI VLANNILAEF LKPFVIDNNK FTIGISIGIA TSSFSECSSE DIIKHADAAL YQVKNSGKGS YHLTVVN
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