Gene CPS_3923 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCPS_3923 
Symbol 
ID3520125 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameColwellia psychrerythraea 34H 
KingdomBacteria 
Replicon accessionNC_003910 
Strand
Start bp4096525 
End bp4097418 
Gene Length894 bp 
Protein Length297 aa 
Translation table11 
GC content36% 
IMG OID637286369 
Productsensory box protein 
Protein accessionYP_270581 
Protein GI71279665 
COG category[T] Signal transduction mechanisms 
COG ID[COG2199] FOG: GGDEF domain
[COG2202] FOG: PAS/PAC domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATATTAC CTGAATATAA TGAAACAGAT TTTATGCAAG CCGTTATCAA TGCGGCGCCA 
ACGCCTATTT TTTATAAAGA TGCACAAGGT CGATATTTAG GATGCAATAA AGCCTTTGAA
GAATATATAG GGTTAAACCG TGAGCAATTA ATCGGTAAAA GTGTCTTAGA ACTCTTTGAT
GATGAGCTAG CTAGAACTTA CTTTGAAGCA GACAATGCGC TTTTTGAGAG AAAAGGTACG
CAAATTTATG AAGCTAAGGT GGAGTATGCT GATGGTACAA CTCACGATGT TATGTTTCAC
AAGGCTTATT TTCACGCCGA AGGTATCGAA GGCATCGTAG GTTCAATACT TGATATTACT
GAGCGAAAAA AAGCTGAAAA ATCACTAGAA CAACTGGCAT TAAGCGATAG CTTAACGGGG
TTAGATAATA GATACTCGTT AATGAAAAGT TTAAAACACT CACTGTTACG CCAGCATCGA
GAAAACTTTA CCTTGGCATT TTTGATGTTA GATTTGGATG GGTTTAAACA GATTAATGAT
AACTATGGTC ACCCTGTAGG AGATGCTCTC TTAATAGAAG TAGCCAACAA GTTAAAGAAT
CACTTTCGAG AAAGTGATGT CATTGCTAGG GTTGGCGGTG ATGAATTTTC TGTAATACTA
GAGAATATTC ATTCTACCGA GTCGTTAATA GTATTAGCAA ATAATATCTT AGCTGAATTT
CTTAAACCTT TTGTTATTGA TAATAACAAG TTCACCATAG GGATTAGCAT TGGTATTGCG
ACATCATCAT TTAGCGAATG CTCATCTGAA GACATTATTA AACATGCAGA TGCAGCACTA
TACCAAGTAA AAAATAGTGG TAAAGGGAGT TATCATTTAA CGGTAGTCAA TTAG
 
Protein sequence
MILPEYNETD FMQAVINAAP TPIFYKDAQG RYLGCNKAFE EYIGLNREQL IGKSVLELFD 
DELARTYFEA DNALFERKGT QIYEAKVEYA DGTTHDVMFH KAYFHAEGIE GIVGSILDIT
ERKKAEKSLE QLALSDSLTG LDNRYSLMKS LKHSLLRQHR ENFTLAFLML DLDGFKQIND
NYGHPVGDAL LIEVANKLKN HFRESDVIAR VGGDEFSVIL ENIHSTESLI VLANNILAEF
LKPFVIDNNK FTIGISIGIA TSSFSECSSE DIIKHADAAL YQVKNSGKGS YHLTVVN