Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPS_3808 |
Symbol | |
ID | 3521002 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Colwellia psychrerythraea 34H |
Kingdom | Bacteria |
Replicon accession | NC_003910 |
Strand | + |
Start bp | 3974140 |
End bp | 3976188 |
Gene Length | 2049 bp |
Protein Length | 682 aa |
Translation table | 11 |
GC content | 38% |
IMG OID | 637286255 |
Product | hypothetical protein |
Protein accession | YP_270471 |
Protein GI | 71280536 |
COG category | [E] Amino acid transport and metabolism [S] Function unknown |
COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) [COG4121] Uncharacterized conserved protein |
TIGRFAM ID | [TIGR03197] tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.424966 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAAAAC TCGATAAAAC AAATAATAGC AATAAATTAT CCTACCAAAA AGATGGAACC CCTTATTGCC AGCGCTTTGA TGATATTTAT TTTGAAAGTG AGTCAGGTTA TCAGCAAAGT GATTTTGTTT TTATTCAAAA AAATAAAATA GGATTACGTT TACAAATTGC TAAACAAACA TTTACCGTGG CAGAAACAGG TTTTGGCACT GGGTTAAATT TTTTATTAAC CTTACAGGCG TACCAAAAAG CACAACAAGT TTCATCGTTC CAGCTAGCAC CTTTGCATTT CATCAGCGTG GAAAAGTACC CACTAACAAA AGAGCAACTA GTCCAGTCTT TGTCTATTTT ACCGCAACTA CAATCGTTAG CCTTAACATT CATTAATAGT TACCCTGATT GCCCTGTCGA AGAGTTTGGT CAAGAATTTA AAACAACCTT TTTCAATGGC CAAGTACGGT TAACTCTTAT CTTTGATGAT GCCGCCCAAG GTTTCTCTTC ATTAAACTGT TCAAAAGAAG GTTTAGTCGA TGCTTGGTAT TTAGATGGAT TTACTCCAGC AAAAAACCCT GACATGTGGA GTAAGGATTT ATTCTCTCAA ATTGGCAGAC TTTCTAAAGA TCAAGCCACA CTGACCACAT TTACTGTTGC TGGCTTTGTA AAAAGACAAT TGCGTGATAT CGGCTTTCGA CTTGAAAAAC TATTAGCGAA AGGTAAAAAG AAAGAAATGC TGTCTGCTGT CATGCAAAGT AACCCGATAA CGAATAAAGG CTACTATTTA AGACCTCTTA TTACAAAACC CCAACACGTA AGTATTATTG GGGGTGGTAT CGCTTCTGCT TGTGCTGCTT ATGCATTAAC TAAGCAAGGA GTAAAAGTAA CTTTATACTG TAAAGATACT TCTCTTGCGC AAGGTGGGTC TAGCAATGCG ATTGGCGCTT TATATCCTTT ATTACACCAA CAGGAAGATG ATATAAGCTC TTTTTACCAG CAAGCTTTCT GGCGTGCTAA AGCGTTATAT ACAGAGATTG CCGAGCAAGG TTTTTCATTC GCACACCAAT GGTGTGGATT ATTAGAAGTA TCCTACAAGG AAGCATTGAT TAAGAGACAA CAGGCATTTG AAAGCTTGAA TACTTGGCCT AATGAGCTCA TCCATGGAGT CAATGCAAAG CAAGCCAGCG AACTTGCAAA TATAGATTTA CCTTATGGTG GTCTTTTTAT GCCTAACGCT GGTTGGATGT CACCTCGAGA CTTAGTCAAA CAAATTTTTA ATGCGGCCAA ATCAACTACC CGTTTAAAAA TAATGACCGA CACTCATATC ACTAAAATAC AACAAGTTGC TAACCCCAGC TCAAATGAAA ATGGCACGTC TTGGTCTTTA ACGAGTAACC AAGGTGAATT TAACGCCAGT GTATTGGTAA TATGCGGAGG TGCTGATGCG ATTGAAATCG AACAGCTAAA ATCGTTGCCG CTTACGGCTA CTCGTGGCCA AGTAACAAGT ATGAAGAGTA ATAAGAAGAT AAATAAACTT TCTACCGTTA TTTGCCATAA GGGTTATTTA ACCCCTGAGA ATAACGGCAT CCATTGCATT GGGGCAACGT TCCAGAAAAA TGATACTAAT ATCACCACGA ACAAAGCTGA TGATGACTAT AATTTAACGA TGTTAACTAA GTGCTTACCA GAGTTATCGT CAACTATTGA TTGGCAAGAA CAAGATATTT CATCAAGTAA AGCAAGACTA CGTTGTATGT CACAAGATCA CTTACCTCTT GTTGGCGCAG TACCTGATAT TAAAGAACAT GTAGCAACTT ACTCTCATTT AGCCAAAGAT AAAAATTGGA AATATAGCCA AGCAGCACCG TGTATTGATA ACCTCTATGT CCTACTTGGG CTTGGTGCCC GTGGCTTGTG TTCCGCACCT TTGGCTGCTG ATATTTTAAC AGCAGAGTTA TGTAATACCC CTTACCCTGT AGATAGCCAA ATGTTATTCA ACTTAAGTCC TAACCGCTTT ATCATCAGGG ATATTATAAA ACGAAAAATA AAGTCATAA
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Protein sequence | MKKLDKTNNS NKLSYQKDGT PYCQRFDDIY FESESGYQQS DFVFIQKNKI GLRLQIAKQT FTVAETGFGT GLNFLLTLQA YQKAQQVSSF QLAPLHFISV EKYPLTKEQL VQSLSILPQL QSLALTFINS YPDCPVEEFG QEFKTTFFNG QVRLTLIFDD AAQGFSSLNC SKEGLVDAWY LDGFTPAKNP DMWSKDLFSQ IGRLSKDQAT LTTFTVAGFV KRQLRDIGFR LEKLLAKGKK KEMLSAVMQS NPITNKGYYL RPLITKPQHV SIIGGGIASA CAAYALTKQG VKVTLYCKDT SLAQGGSSNA IGALYPLLHQ QEDDISSFYQ QAFWRAKALY TEIAEQGFSF AHQWCGLLEV SYKEALIKRQ QAFESLNTWP NELIHGVNAK QASELANIDL PYGGLFMPNA GWMSPRDLVK QIFNAAKSTT RLKIMTDTHI TKIQQVANPS SNENGTSWSL TSNQGEFNAS VLVICGGADA IEIEQLKSLP LTATRGQVTS MKSNKKINKL STVICHKGYL TPENNGIHCI GATFQKNDTN ITTNKADDDY NLTMLTKCLP ELSSTIDWQE QDISSSKARL RCMSQDHLPL VGAVPDIKEH VATYSHLAKD KNWKYSQAAP CIDNLYVLLG LGARGLCSAP LAADILTAEL CNTPYPVDSQ MLFNLSPNRF IIRDIIKRKI KS
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