Gene CPS_3808 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCPS_3808 
Symbol 
ID3521002 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameColwellia psychrerythraea 34H 
KingdomBacteria 
Replicon accessionNC_003910 
Strand
Start bp3974140 
End bp3976188 
Gene Length2049 bp 
Protein Length682 aa 
Translation table11 
GC content38% 
IMG OID637286255 
Producthypothetical protein 
Protein accessionYP_270471 
Protein GI71280536 
COG category[E] Amino acid transport and metabolism
[S] Function unknown 
COG ID[COG0665] Glycine/D-amino acid oxidases (deaminating)
[COG4121] Uncharacterized conserved protein 
TIGRFAM ID[TIGR03197] tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.424966 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAAAAC TCGATAAAAC AAATAATAGC AATAAATTAT CCTACCAAAA AGATGGAACC 
CCTTATTGCC AGCGCTTTGA TGATATTTAT TTTGAAAGTG AGTCAGGTTA TCAGCAAAGT
GATTTTGTTT TTATTCAAAA AAATAAAATA GGATTACGTT TACAAATTGC TAAACAAACA
TTTACCGTGG CAGAAACAGG TTTTGGCACT GGGTTAAATT TTTTATTAAC CTTACAGGCG
TACCAAAAAG CACAACAAGT TTCATCGTTC CAGCTAGCAC CTTTGCATTT CATCAGCGTG
GAAAAGTACC CACTAACAAA AGAGCAACTA GTCCAGTCTT TGTCTATTTT ACCGCAACTA
CAATCGTTAG CCTTAACATT CATTAATAGT TACCCTGATT GCCCTGTCGA AGAGTTTGGT
CAAGAATTTA AAACAACCTT TTTCAATGGC CAAGTACGGT TAACTCTTAT CTTTGATGAT
GCCGCCCAAG GTTTCTCTTC ATTAAACTGT TCAAAAGAAG GTTTAGTCGA TGCTTGGTAT
TTAGATGGAT TTACTCCAGC AAAAAACCCT GACATGTGGA GTAAGGATTT ATTCTCTCAA
ATTGGCAGAC TTTCTAAAGA TCAAGCCACA CTGACCACAT TTACTGTTGC TGGCTTTGTA
AAAAGACAAT TGCGTGATAT CGGCTTTCGA CTTGAAAAAC TATTAGCGAA AGGTAAAAAG
AAAGAAATGC TGTCTGCTGT CATGCAAAGT AACCCGATAA CGAATAAAGG CTACTATTTA
AGACCTCTTA TTACAAAACC CCAACACGTA AGTATTATTG GGGGTGGTAT CGCTTCTGCT
TGTGCTGCTT ATGCATTAAC TAAGCAAGGA GTAAAAGTAA CTTTATACTG TAAAGATACT
TCTCTTGCGC AAGGTGGGTC TAGCAATGCG ATTGGCGCTT TATATCCTTT ATTACACCAA
CAGGAAGATG ATATAAGCTC TTTTTACCAG CAAGCTTTCT GGCGTGCTAA AGCGTTATAT
ACAGAGATTG CCGAGCAAGG TTTTTCATTC GCACACCAAT GGTGTGGATT ATTAGAAGTA
TCCTACAAGG AAGCATTGAT TAAGAGACAA CAGGCATTTG AAAGCTTGAA TACTTGGCCT
AATGAGCTCA TCCATGGAGT CAATGCAAAG CAAGCCAGCG AACTTGCAAA TATAGATTTA
CCTTATGGTG GTCTTTTTAT GCCTAACGCT GGTTGGATGT CACCTCGAGA CTTAGTCAAA
CAAATTTTTA ATGCGGCCAA ATCAACTACC CGTTTAAAAA TAATGACCGA CACTCATATC
ACTAAAATAC AACAAGTTGC TAACCCCAGC TCAAATGAAA ATGGCACGTC TTGGTCTTTA
ACGAGTAACC AAGGTGAATT TAACGCCAGT GTATTGGTAA TATGCGGAGG TGCTGATGCG
ATTGAAATCG AACAGCTAAA ATCGTTGCCG CTTACGGCTA CTCGTGGCCA AGTAACAAGT
ATGAAGAGTA ATAAGAAGAT AAATAAACTT TCTACCGTTA TTTGCCATAA GGGTTATTTA
ACCCCTGAGA ATAACGGCAT CCATTGCATT GGGGCAACGT TCCAGAAAAA TGATACTAAT
ATCACCACGA ACAAAGCTGA TGATGACTAT AATTTAACGA TGTTAACTAA GTGCTTACCA
GAGTTATCGT CAACTATTGA TTGGCAAGAA CAAGATATTT CATCAAGTAA AGCAAGACTA
CGTTGTATGT CACAAGATCA CTTACCTCTT GTTGGCGCAG TACCTGATAT TAAAGAACAT
GTAGCAACTT ACTCTCATTT AGCCAAAGAT AAAAATTGGA AATATAGCCA AGCAGCACCG
TGTATTGATA ACCTCTATGT CCTACTTGGG CTTGGTGCCC GTGGCTTGTG TTCCGCACCT
TTGGCTGCTG ATATTTTAAC AGCAGAGTTA TGTAATACCC CTTACCCTGT AGATAGCCAA
ATGTTATTCA ACTTAAGTCC TAACCGCTTT ATCATCAGGG ATATTATAAA ACGAAAAATA
AAGTCATAA
 
Protein sequence
MKKLDKTNNS NKLSYQKDGT PYCQRFDDIY FESESGYQQS DFVFIQKNKI GLRLQIAKQT 
FTVAETGFGT GLNFLLTLQA YQKAQQVSSF QLAPLHFISV EKYPLTKEQL VQSLSILPQL
QSLALTFINS YPDCPVEEFG QEFKTTFFNG QVRLTLIFDD AAQGFSSLNC SKEGLVDAWY
LDGFTPAKNP DMWSKDLFSQ IGRLSKDQAT LTTFTVAGFV KRQLRDIGFR LEKLLAKGKK
KEMLSAVMQS NPITNKGYYL RPLITKPQHV SIIGGGIASA CAAYALTKQG VKVTLYCKDT
SLAQGGSSNA IGALYPLLHQ QEDDISSFYQ QAFWRAKALY TEIAEQGFSF AHQWCGLLEV
SYKEALIKRQ QAFESLNTWP NELIHGVNAK QASELANIDL PYGGLFMPNA GWMSPRDLVK
QIFNAAKSTT RLKIMTDTHI TKIQQVANPS SNENGTSWSL TSNQGEFNAS VLVICGGADA
IEIEQLKSLP LTATRGQVTS MKSNKKINKL STVICHKGYL TPENNGIHCI GATFQKNDTN
ITTNKADDDY NLTMLTKCLP ELSSTIDWQE QDISSSKARL RCMSQDHLPL VGAVPDIKEH
VATYSHLAKD KNWKYSQAAP CIDNLYVLLG LGARGLCSAP LAADILTAEL CNTPYPVDSQ
MLFNLSPNRF IIRDIIKRKI KS