| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_3668 |
|---|
| Symbol | |
|---|
| ID | 3519722 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | + |
|---|
| Start bp | 3811057 |
|---|
| End bp | 3812223 |
|---|
| Gene Length | 1167 bp |
|---|
| Protein Length | 388 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 637286116 |
|---|
| Product | putative oxygen-independent coproporphyrinogen III oxidase |
|---|
| Protein accession | YP_270336 |
|---|
| Protein GI | 71278082 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0635] Coproporphyrinogen III oxidase and related Fe-S oxidoreductases |
|---|
| TIGRFAM ID | [TIGR00539] putative oxygen-independent coproporphyrinogen III oxidase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.231493 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTAGAAC TGTTAGAAAA TCAGCCCTTA TCACTTTATA TTCATATTCC ATGGTGTGTG
GAAAAATGCC CTTATTGTGA CTTTAATTCA CATGCCGTTA AAAGTGCTAT CCCTGAGCAA
GATTATGTCG CAGCGCTGAT CAGAGATTTA GACGCAGATA TTGCACGTTT TGGGTTAAGC
ACTCGCTCCT TACATTCGAT ATTCATTGGT GGTGGTACGC CGAGTTTATT TTCTGCTGCG
TCTATTAAAG ACTTGCTAGA ACAAGTACTC AATCGTTTTG ACCATAAAGC AGATATAGAA
ATCACTTTAG AAGCAAATCC TGGCACTGTT GAAGCAGATA AATTTATAGG CTTTTTCAAG
GCCGGTGTTA ATAGACTCTC TATCGGCGTA CAGAGCTTTG CCTCTGATAA ATTAATTAAG
CTTGGCCGTA TTCATGATAG TAACCAAGCT AAAATAGCAG CAAAATTGGC TACAGAAAGT
GGTGTCAGCA GTTTTAATTT AGATCTAATG CATGGCTTAC CCAATCAATC GTTAGATAAT
GCCCTTGATG ATCTAAAAAC GGCTATCAGC CTAAATCCGA ATCATATTTC TTGGTATCAA
TTAACGATTG AACCCAATAC TATTTTTCAC TCTAAACCGC CTAAGTTACC TGTTGATGAT
ATTTTATGGG AGATTCAGGA CCAGGGCGTT AAGTTACTCA ATGAAGCGGG TTATCAGCAG
TATGAGATTT CTGCATACGC TAAGCTAGGC TATCAATGTC AGCATAATTT AAATTATTGG
CAATATGGTG ATTACCTTGG CATTGGCTGT GGTGCCCATG GAAAAATCAC TGATAGTCGA
AGCCAGAAAA TAATGCGTAC CATTAAAGTA AAACACCCTA AAGGCTATTT AGATGATAAT
CGTGATTTCT TAGATAAATT ATCTGAAGTT GATGAAAGTG AACGTCCTTT TGAGTTCATG
ATGAATCAGC TAAGACTGCA CAGCGCTTTT AGCATTGAGC AGTTCCAAAC AAGCACAGGG
CTTAATATAA AGGTAGTATT ACCTTTGCTT AAAGAAGCTC AACAAAAAAA CCTCATGACC
TGTGAAGTGA TAGACAATGA AGAATATTGG CTGGTAACTC AGCTAGGACA ACGATATTTA
AATGATTTAC TGGAGATATT CTTGTGA
|
|---|
| Protein sequence | MLELLENQPL SLYIHIPWCV EKCPYCDFNS HAVKSAIPEQ DYVAALIRDL DADIARFGLS
TRSLHSIFIG GGTPSLFSAA SIKDLLEQVL NRFDHKADIE ITLEANPGTV EADKFIGFFK
AGVNRLSIGV QSFASDKLIK LGRIHDSNQA KIAAKLATES GVSSFNLDLM HGLPNQSLDN
ALDDLKTAIS LNPNHISWYQ LTIEPNTIFH SKPPKLPVDD ILWEIQDQGV KLLNEAGYQQ
YEISAYAKLG YQCQHNLNYW QYGDYLGIGC GAHGKITDSR SQKIMRTIKV KHPKGYLDDN
RDFLDKLSEV DESERPFEFM MNQLRLHSAF SIEQFQTSTG LNIKVVLPLL KEAQQKNLMT
CEVIDNEEYW LVTQLGQRYL NDLLEIFL
|
|---|
| |