Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPS_3662 |
Symbol | pilT |
ID | 3522190 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Colwellia psychrerythraea 34H |
Kingdom | Bacteria |
Replicon accession | NC_003910 |
Strand | - |
Start bp | 3806379 |
End bp | 3807422 |
Gene Length | 1044 bp |
Protein Length | 347 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 637286110 |
Product | twitching motility protein PilT |
Protein accession | YP_270330 |
Protein GI | 71281718 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG2805] Tfp pilus assembly protein, pilus retraction ATPase PilT |
TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.69581 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGATATTA CCGAACTACT CGCATTTAGT GTGGAGCATA ACGCATCAGA TTTACATTTA TCAACAGGTA CACCGCCCGC TATTCGTGTT GATGGTGACG TACGTAAACT GAATATTCCA GCCTTTGATG GCAAAGATGT TAATGCGTTA GTTTATGACA TTATGAATGA TCGTCAACGT AAAGAATATG AAGAAAACTT GGAAGTCGAT TTCTCATTTG AAGTACCAAA CTTAGCACGT TTCAGGGTTA ATGCTTTTAA TCAAAATAGA GGCCCCGCAG CCGTATTTCG TACAATCCCG AGTAAAATCC TTTCACTTGA TGATTTAGGG TGTCCTGAAA TATTTCGTGA AATATCAGAT ACACCACGTG GCTTGGTGTT AGTTACTGGG CCTACCGGCT CAGGAAAATC AACCACGTTA GCTGCGATGG TTGATTATAT TAATGATCAT AAACACGATC ATATTCTCAC CATTGAAGAT CCAATAGAAT TTGTACATGA AAATAAAAAG TGTCTTATTA ATCAGCGTGA AGTTCACCGC GATACGTTAA GCTTTTCAGC TGCATTACGT TCAGCCTTGC GTGAAGATCC AGATGTGATC TTAGTCGGTG AAATGCGAGA TTTAGAAACG ATTCGCTTAG CTATGACAGC AGCAGAAACA GGCCATTTAG TCTTTGGCAC CTTGCATACA ACCTCAGCAC CAAAAACTAT TGACCGTATT ATTGATGTAT TTCCAGGCGA AGAAAAATCT ATGGTTCGCT CAATGCTGTC AGAGTCACTT CGCGCGGTAA TTTCACAATG CCTAATTAAA AGAGTCGGTG GTGGTCGTGT TGCTGCTCAT GAAATTATGA TTGGGGTTCC CGCTATTCGA AACCTTATTC GTGAAGATAA AATTGCCCAA ATGTACTCAG CGATTCAAAC AGGTATGCAA CATGGCATGC AGACTATGGA TCAATGTCTA CAGGGCCTTG TTAACAGAGG CATGATTACT AAACAAGATG CGATGGAAAA AGCAGTTGAT AAAAATCAAT TTTCAGGCTT TTAA
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Protein sequence | MDITELLAFS VEHNASDLHL STGTPPAIRV DGDVRKLNIP AFDGKDVNAL VYDIMNDRQR KEYEENLEVD FSFEVPNLAR FRVNAFNQNR GPAAVFRTIP SKILSLDDLG CPEIFREISD TPRGLVLVTG PTGSGKSTTL AAMVDYINDH KHDHILTIED PIEFVHENKK CLINQREVHR DTLSFSAALR SALREDPDVI LVGEMRDLET IRLAMTAAET GHLVFGTLHT TSAPKTIDRI IDVFPGEEKS MVRSMLSESL RAVISQCLIK RVGGGRVAAH EIMIGVPAIR NLIREDKIAQ MYSAIQTGMQ HGMQTMDQCL QGLVNRGMIT KQDAMEKAVD KNQFSGF
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