| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_3628 |
|---|
| Symbol | |
|---|
| ID | 3519159 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | - |
|---|
| Start bp | 3765594 |
|---|
| End bp | 3767801 |
|---|
| Gene Length | 2208 bp |
|---|
| Protein Length | 735 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 637286076 |
|---|
| Product | patatin-like phospholipase family protein |
|---|
| Protein accession | YP_270296 |
|---|
| Protein GI | 71278240 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1752] Predicted esterase of the alpha-beta hydrolase superfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGTTTCA TTATTACTTT ATTTTTAATA CTTCAACTTA CTACTTTGGC TTTTTCGGCC
CACTCTAGAG ACAAGATTGG TCTGGTGTTA AGTGGTGGCG GTGCTAAAGG CTCAGCCCAT
ATTGGCGTAC TTAAAGTACT CGAACAGCAT AATATTCCTA TCGATTATGT GGTCGGTACG
AGTATTGGCG CCTATGTTGG TGGAATGTAC GCGTTAGGTT ATGAAGTGAG TGAAATTGAA
GCCATTATGC TTGGCATGCC TTGGGATGAG AGCTATTCAG ACTTTATACC CAGAGAATCA
TTGGCTTATG ATAAAAAACA GCATAGAGAT AGGTATAACA TATCAATACG ATTAGGTTAT
AGCGATGGTG AATTTAAAGT TCCACATGGG TTGTTGTTAG GTCAGAGTGC TTACCAAATT
CTACAGCGTT CAACGGATAC TGTTCGCTCT TTTGACAGTT TTGATGATTT GGCAATCCCT
TATCGCGCTG TTGCTTCTGA TATCGCCACA GCAAAAATGG TCGTTCTCGA TTCTGGCAGC
ATTAATGAGG CTATGAAAGC ATCAGCAGCG GTACCAGGTA TTGTAGCAGC CGTTGAAATT
GATGGTAAAA CGCTAGTTGA TGGCGGCATC ACCAATAACA TGCCAATTGA TGTAATCAAA
GCAATGGGCG CCGATATTGT TATTGCTATT GATATAGGTT CGCCGCTCGC TGAACAAAGT
GAGCTAACCA GTACGGTATC TGTACTCAAT CAGCTATCTA CAATTCTCAC CAACAATACC
AGTTTGGCGC AAAAGGCGTT ACTTACTGAT AAAGATATTT TGTTGCGTCC CGCTATCGAT
AAATTAAGTA CCACTGACTG GTCTGTTATG CCTGAAGCTT TGAAGTTAGG TGAGCAGGAA
GCACAGGCAC AATCACAAGC GTTGATGAAA TTAGCAATCA GTGATGTTGA TTATCAAGCC
TATAAAAATC AAAAAAAGCT GAAGGCAAAA AAATGGTTTG ATGCTTTACC CAGACATATT
ACTAAAATTA AAATTAACAA TAACTCTAAA GTAGAAAACG ACATAATAGA GAAAGTTTTT
GCGGTTGAAC TAGGAAAAAA GCTCACTAAA GAAGCCTTAG ATTTAGCTAT AAATAGAGTC
TATGCGTTAG ATAAATTTGA ACAAGTCACC GTTGAATTTG ATGATTCGCC AGAAGGACGA
ATTATCACCT TAACTACGCA AGCTAAGTCT TGGGGGCCAA ATTATTTTGA TTTTGGCTTT
AACTTAAAAA CAGATTTCTC TGATCAGTCT ATTACGTCAA TCAATATGTC TTATTTGATG
ACAAATGTTT CGATGAATGG TGGACGTTGG TTAAACGAGC TTGAATTGGG GTGGGAAAGT
TTACTCGCGA GTGAGTTCTA TCAACCGCTT GATCACAGTC ATGATATATA TAGTAGAGCA
AGAGTCTCTT TTGCCCAAGA TAAGTGGGAG AAAACAAGTT TTCGTGAAGA GCTCAGAAAT
GAGTATTATC AAGCGACACT AGCATTGGGC TATGATTATT CTTTTAAAGG GATTATTGAG
TTAGGCGTTA TTGCTGAAAC AGGTGATCTT TCTCTTGATA AACCAGGTAC TGATGATTTT
GATTATGACA GTTACGGGAG TTTTATAACG TTTGGTTACG ATACCCTAGA TAGTATTAAT
TTCCCCACCA ATGGTAATAA ATTATTAATT GAAGTGAAGT GGTTAAAAGA TGAATATTCA
CCTCAATTAA GTGATGTAGA AAAAGATACT GCGACTACCT TTGCCCTTGA TTGGCGAGGC
GCTATAGGGA TTAGAGGTCA TACTTTTGTT GGAATAGCCT CTTTTGCCAC TATCGACAAT
GAAAGCGACT TTAGTGTCCA TGTAACTGAA TTAGGTGGAT TTCTAAACCT TTCAGGTTAC
CAAGAAGATG CGCTAATTGG CGTACATAAA GTCTTTGCTG CAGTTGTTTA TCAATATGAT
TTAGGTCGTG AAATACCCGG TGGCTCAGGC TTACCTATTT ATTTAGGCAC AAGTTTAGAA
GCCGGGAATG TTTGGGGGGG AGAAGACAGG ATTAGGTATA ATGATTTAAT CAGTTCAGGC
AGTATTTACC TAGGTACAGA TACCAGTTTT GGGCCTGCAG TTTTAGGGAT GGGCTTTGCG
ACAAGTGGAG AACATTCATT CTTCTTATCA ATAGGTAAAA ACTGGTAG
|
|---|
| Protein sequence | MRFIITLFLI LQLTTLAFSA HSRDKIGLVL SGGGAKGSAH IGVLKVLEQH NIPIDYVVGT
SIGAYVGGMY ALGYEVSEIE AIMLGMPWDE SYSDFIPRES LAYDKKQHRD RYNISIRLGY
SDGEFKVPHG LLLGQSAYQI LQRSTDTVRS FDSFDDLAIP YRAVASDIAT AKMVVLDSGS
INEAMKASAA VPGIVAAVEI DGKTLVDGGI TNNMPIDVIK AMGADIVIAI DIGSPLAEQS
ELTSTVSVLN QLSTILTNNT SLAQKALLTD KDILLRPAID KLSTTDWSVM PEALKLGEQE
AQAQSQALMK LAISDVDYQA YKNQKKLKAK KWFDALPRHI TKIKINNNSK VENDIIEKVF
AVELGKKLTK EALDLAINRV YALDKFEQVT VEFDDSPEGR IITLTTQAKS WGPNYFDFGF
NLKTDFSDQS ITSINMSYLM TNVSMNGGRW LNELELGWES LLASEFYQPL DHSHDIYSRA
RVSFAQDKWE KTSFREELRN EYYQATLALG YDYSFKGIIE LGVIAETGDL SLDKPGTDDF
DYDSYGSFIT FGYDTLDSIN FPTNGNKLLI EVKWLKDEYS PQLSDVEKDT ATTFALDWRG
AIGIRGHTFV GIASFATIDN ESDFSVHVTE LGGFLNLSGY QEDALIGVHK VFAAVVYQYD
LGREIPGGSG LPIYLGTSLE AGNVWGGEDR IRYNDLISSG SIYLGTDTSF GPAVLGMGFA
TSGEHSFFLS IGKNW
|
|---|
| |