| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_3572 |
|---|
| Symbol | miaB |
|---|
| ID | 3520404 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | + |
|---|
| Start bp | 3709073 |
|---|
| End bp | 3710515 |
|---|
| Gene Length | 1443 bp |
|---|
| Protein Length | 480 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 637286020 |
|---|
| Product | (dimethylallyl)adenosine tRNA methylthiotransferase |
|---|
| Protein accession | YP_270240 |
|---|
| Protein GI | 71279941 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0621] 2-methylthioadenine synthetase |
|---|
| TIGRFAM ID | [TIGR00089] RNA modification enzyme, MiaB family
[TIGR01574] tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTAAAA AGCTATATAT CAAAACTTGG GGCTGTCAGA TGAACGAGTA TGACTCGCAG
AAGATGGCAG AATTGTTGGA TTCAACCCAT GGTTTCTCGT TGGTTGAAGA AGCGGAACAA
GCTGATGTTA TTTTGCTTAA TACTTGCTCC ATTCGTGAGA AAGCTCAAGA AAAAGTATTT
CATCAACTAG GTCGTTGGAA AAATCTAAAA GATAAAAAAC CAGATTTACT CATTGGTGTT
GGTGGTTGTG TTGCCTCACA AGAAGGTGAC TCTATACGTA AACGTGCTCC TTTTGTCGAT
ATGATTTTTG GTCCACAAAC ATTGCACCGT TTACCTGAAA TGCTAAATCA ATTGCAGCAC
TCAAAGAGTC CAATTATTGA TGTAAGCTTT CCAGAAATTG AAAAATTTGA CCGATTGCCT
GAACCTAAAG CTGACGGTGC CAGTGCATTT GTCTCTATTA TGGAAGGCTG TAGTAAATAT
TGTACTTTCT GTGTAGTGCC TTACACACGT GGCGAAGAAG TTAGTCGTCC ACTTGATGAT
GTATTATACG AAATAGCGCA ACTTGCTGAG CAAGGTGTTC GTGAAGTAAA CCTATTAGGC
CAAAACGTAA ATGCTTATCG TGGTGAAACA CATGATGGTT CAATTTGTCG CTTTGCTGAT
CTAGTACGTT TGGTTGCCAC CATAGATGGT ATCGATCGTA TTCGTTATAC CACTTCTCAC
CCGGTTGAGT TTACTGACGA TATTATTGAA GCCTACACCG ATGTTCCTGA ACTAGTAAAT
CACTTGCATC TTCCGGTTCA AAGTGGCTGT GATCGCATTC TAACGCAAAT GAAACGTGGC
CATACCGCGC TTGAGTATAA ATCTCAAATT CGAAAATTGA AAAAAGTACG CCCTGAATTA
TCTATGTCTT CTGATTTCAT TATCGGCTTC CCAGGGGAAA CCGATGAAGA CTTCACGGCA
ACGATGGATT TAATTAAAGC GGTTGATTTT GATTTAAGTT TTAGCTTTAT CTATAGCGCT
CGTCCTGGTA CTCCAGCAGC CGATTTACCT GATGATATTA GTGATCAAAC TAAGAAAGAT
CGTTTAAAGC TACTACAAGA GCAAATAACA CATCAAGCAT TACGCATTGC CAGACAAATG
CTTAATACAG AGCAACGTGT TCTTGTTGAA GGTCCTTCAA GAAAAAATCC TATGGAATTA
CGTGGTAAAA CAGAAAATAA CCGTACGGTT AACTTTGTTG CCCCACATAG CGTTATTGGA
CAATTTGTCG ATATCAAAAT TACTGATGTA GTTGCCAACT CTTTACGTGG TGAATTAGTA
AGAGAAGAAA AAGAAATGGG TCTACGTATA GCTCATTCTC CTGCTGATAT TTTGGCAAAT
AACCATCACA TGGCAACGCC AAGTAATCTT GACGAGTTAG GTGTGGGTAC TTTTACACCA
TAA
|
|---|
| Protein sequence | MSKKLYIKTW GCQMNEYDSQ KMAELLDSTH GFSLVEEAEQ ADVILLNTCS IREKAQEKVF
HQLGRWKNLK DKKPDLLIGV GGCVASQEGD SIRKRAPFVD MIFGPQTLHR LPEMLNQLQH
SKSPIIDVSF PEIEKFDRLP EPKADGASAF VSIMEGCSKY CTFCVVPYTR GEEVSRPLDD
VLYEIAQLAE QGVREVNLLG QNVNAYRGET HDGSICRFAD LVRLVATIDG IDRIRYTTSH
PVEFTDDIIE AYTDVPELVN HLHLPVQSGC DRILTQMKRG HTALEYKSQI RKLKKVRPEL
SMSSDFIIGF PGETDEDFTA TMDLIKAVDF DLSFSFIYSA RPGTPAADLP DDISDQTKKD
RLKLLQEQIT HQALRIARQM LNTEQRVLVE GPSRKNPMEL RGKTENNRTV NFVAPHSVIG
QFVDIKITDV VANSLRGELV REEKEMGLRI AHSPADILAN NHHMATPSNL DELGVGTFTP
|
|---|
| |