| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_3544 |
|---|
| Symbol | |
|---|
| ID | 3518348 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | - |
|---|
| Start bp | 3684077 |
|---|
| End bp | 3685009 |
|---|
| Gene Length | 933 bp |
|---|
| Protein Length | 310 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 637285992 |
|---|
| Product | DNA-binding transcriptional activator GcvA |
|---|
| Protein accession | YP_270218 |
|---|
| Protein GI | 71278755 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.00470366 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGGCTAGTA GACTCCCACC ATTAAACGCT TTGCGAGCAT TTGACGCATC GGCAAGGCAG
CTTAGCTTTA CGCGAGCAGC AGAAGAGCTT TTTGTAACGC AGGCTGCAAT AAGCCATCAA
ATTAAATCTT TAGAAGATCA TTTAGGCATT AAATTGTTTA TGCGAAAAAA CCGAGCCTTG
CTACTGACAG AAGAAGGACA ATCGTATTAT CTGGACATTA AAGATATTTT TACCTCGTTG
CATGAAGCCA CTGAGCGCTT ACTGGCTCGT GGGGCTAAAG GAGCCATAAC GGTTAGTTCG
CAAGCAAGTT TTGCTATCCA ATGGTTAGTC CCTAGGTTAA CGGCTTTTAA TTCATTGCAT
CAGGATATTG ATGTTAGGAT CAAAGCGGTT GATCAGCCTG AGAACTCATT GACTGAAGAT
GTTGATATCG CGATTTATTA TGGTCGAGGT CGTTGGCCAA ATATTCATGC TGATAAATTG
CATACCGAAT ACCTAATTCC CGTTTGTTCA CCATTGTTAG TGCAAGAAAA TGCTGCTAAT
GGCAAGCCAC CTCTTTTAAC ATTAGAGGAT TTGTCTGAAC ATACATTATT ACATGATACT
TCACGTAAAG ATTGGAAACG CTGGTTCAAA CAAGTGGGCG TTAAAGGGGC TAATGTCAAT
CATGGCCCTA TTTTTAGTCA CTCCGCTATG GTTTTACAAG CGGCGTTACA CGGACAAGGC
ATTGCGTTGG CTTACAGCGT GTTAGCAAAG CCTGATATAG ACTCAGGACG ATTAGTTTGC
CCTTTTAACG ATGTTTTAGT GAGTAAGAAT GCTTATTTCA TCGTCTGTCG TGAAAATCAA
AAAGATATTG GTAAAATTAC TGCTTTTAGA GAGTGGATGT TAGACATGGT TGAAGCAGAG
CAAGCACAAA TTACTGATGG ACAAATAAGT TAA
|
|---|
| Protein sequence | MASRLPPLNA LRAFDASARQ LSFTRAAEEL FVTQAAISHQ IKSLEDHLGI KLFMRKNRAL
LLTEEGQSYY LDIKDIFTSL HEATERLLAR GAKGAITVSS QASFAIQWLV PRLTAFNSLH
QDIDVRIKAV DQPENSLTED VDIAIYYGRG RWPNIHADKL HTEYLIPVCS PLLVQENAAN
GKPPLLTLED LSEHTLLHDT SRKDWKRWFK QVGVKGANVN HGPIFSHSAM VLQAALHGQG
IALAYSVLAK PDIDSGRLVC PFNDVLVSKN AYFIVCRENQ KDIGKITAFR EWMLDMVEAE
QAQITDGQIS
|
|---|
| |