| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_3519 |
|---|
| Symbol | rluB |
|---|
| ID | 3520481 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | - |
|---|
| Start bp | 3657686 |
|---|
| End bp | 3658753 |
|---|
| Gene Length | 1068 bp |
|---|
| Protein Length | 355 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 637285967 |
|---|
| Product | ribosomal large subunit pseudouridine synthase B |
|---|
| Protein accession | YP_270193 |
|---|
| Protein GI | 71280018 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
|---|
| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGGTTG ACAAGAAAAA ACAAGCGAGA AAAGACGAAG CCTTAGATAA AAAATATGGC
ACGCGTGGTA CTGAGAAAAA AGGCACTGCT AAAAAAGGCA TGACCAAGCA AGATGTCGCA
AAGAAGGGCG CAGCTAAAAA AGGTCAGCAT AAAAAAGAGC CTGAAAAGGC AGTGAAGGTT
GAGTTTCAAA AAGCAACGCA TTCAGACTCA GAGAAAGTAC AAAAAGTATT AGCTCGTGCT
GGTAAAGGCT CTCGCCGTGA AATGGAAACC ATGATAAGTG AAGGTCGTGT CAGTATTGAC
GGTAAAGTCG CTTTTCTAGG TGATCGAATC ACAGGTACCG AACAAATTCG CCTTGATGGA
CATCACGTTA AACTTACTGC CCAAGATGAA GATATCTGTC GCGTACTTGT GTATAACAAG
CCAGAAGGTG AAATGTGTAC ACGTAAAGAT CCTGAAGGAA GACCAACCGT TTTTGATCGT
CTTCCTCCTC TTGACGCGGG TCGTTGGGTT GCTGTCGGTC GTTTGGATAT TAATACTTCC
GGTATGTTGT TGTTTACCAC TGATGGTGAA TTAGCTAACC GATTAATGCA TCCGTCACAG
AAAGTAGAGC GTGAATATGC AGTACGTGTC TTTGGTGAAA TCAACGAAGC TATGTTACAA
ACGTTACGTG CAGGTGTTAA ATTAGAAGAT GGTATGGCAC GTTTTCAAAA AATTACTTAC
CGTGGCGGAG AAGGTCGAAA CCATTGGTTC CATGTTGTCT TATCTGAAGG ACGTAACCGA
GAAGTTCGTC GTTTATGGGA AAGCCAAGAT GTACAAGTAA GCCGTCTTAT TCGAGTGCGT
TACGGTGATA TGGAAATGCA GCGACAATTA CCTATGGGTG GTTGGCGTGA ATTGGCGTTA
AAAGAAGTGA ACTATTATCG TCAATTAGTT AACTTAACAC CTGAAGCAGA AAGTAAAGTT
AAAGTTGATG AGAAGGCGAT GGACAATGCT AAAAGTCGTC GAATTCGTCG TTCAGTTAAA
AAGCATCAGC AACGTCATCA GCAAAGTACT CGTCGCCGCC ATAAGTAG
|
|---|
| Protein sequence | MTVDKKKQAR KDEALDKKYG TRGTEKKGTA KKGMTKQDVA KKGAAKKGQH KKEPEKAVKV
EFQKATHSDS EKVQKVLARA GKGSRREMET MISEGRVSID GKVAFLGDRI TGTEQIRLDG
HHVKLTAQDE DICRVLVYNK PEGEMCTRKD PEGRPTVFDR LPPLDAGRWV AVGRLDINTS
GMLLFTTDGE LANRLMHPSQ KVEREYAVRV FGEINEAMLQ TLRAGVKLED GMARFQKITY
RGGEGRNHWF HVVLSEGRNR EVRRLWESQD VQVSRLIRVR YGDMEMQRQL PMGGWRELAL
KEVNYYRQLV NLTPEAESKV KVDEKAMDNA KSRRIRRSVK KHQQRHQQST RRRHK
|
|---|
| |