| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_3369 |
|---|
| Symbol | |
|---|
| ID | 3519830 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | - |
|---|
| Start bp | 3495881 |
|---|
| End bp | 3497515 |
|---|
| Gene Length | 1635 bp |
|---|
| Protein Length | 544 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 637285818 |
|---|
| Product | proton/peptide symporter family protein |
|---|
| Protein accession | YP_270045 |
|---|
| Protein GI | 71279375 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG3104] Dipeptide/tripeptide permease |
|---|
| TIGRFAM ID | [TIGR00924] amino acid/peptide transporter (Peptide:H+ symporter), bacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.31641 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATAAAA CAGATAGCAT TGATATTGAT AAACAAGTCA ATACAGATGA ATTATTTGGT
CACCCTAAAG GTTTGTATAT TTGTTTTGCT ACTGAACTAT GGGAGCGATT TTCATTCTAT
GGCATGAAGT ATTTGCTGCT CTTATATTTA ACTAAATACC ATTTGTTCTC TGACGGAGAA
GGCCTGGAAG TATTAGGCTC ATATGCTGGT TTAGTTTACA CCTTGCCCGT TATAGGCGGC
ATGTTAGCCG ATCGCTATCT TGGCATGAAA AAGTCAGTGA TATTCGGTGG AATCCTACTC
TGTTTGGGGC ATTTATTGAT GGCTGTTGAA GGCCATCAAG CGGTTCAATA TGCGGCAGGT
ACCATTTTAA CTTCAGATCT CACCTTAAAT AATGGCGCGG TACTTAGTGC GGGTACTCTC
TTAACAGAAA CGATTAAAAT TCAAGATTTA GCGGCGCTGA ATGTTTTCTA CTTTGCACTA
TCCCTTATTG TTGTTGGGGT TGGTTTTTTA AAACCCAATA TTTCTACCAT AGTAGGTCAA
CTCTATAGTA AAGATGATCC CCGTCGAGAC TCGGGTTTTA CCATTTTTTA TATGGGCATT
AACCTTGGCT CTTTTGCCGC CACTATTATT TGTGTTTACT TAGGGGAAAC CTACGGCTGG
CGTTACGGTT TTGGTGCTGC GGGCATCGGC ATGTTGTTTG GTTTGGTGAC GTTTACTAAG
GGCCTTAAAT ATTTACGTGG TTTGGCAGAG CCACCAGACG TTGCCGTATT GAGCGAGAAA
GTTTGGGGTT TAATTAGTAG AGAGTACTTA ATCTATTTAA CGGCTATTTT AAGTTTGTCG
GTATTTTGGC TCGTTATTCA ACATGAACCG GTGGTTTTTG CGGCTCAGCA GGTTTTACTG
GTTGTTTCGG GCGTAGGGTT AATCGGTTAT GCGGCATTAA AAGGCAGCAG GGAAGAGTTT
CAGCAAATGC TGGTGTTGAT GGTGTTAATT GGCTCTACCA TCGTTTTTTG GGCTTTGTTC
GAGCAAGCTG CGGGGTCGAT GACGCTATTT GCCGACAGAG TCGTTGAGAG AAATATTGCT
GGCATTGAGA TAACTGCGGG TCAATTTGGC GCTCTCAATG CAGGTTTTAT TATTATGTTG
GCCCTACCTT TTGCTGCATT GTGGGTATGG TTAGAGAAGT TTCGGCTAAA TCCTAATATT
CCGATAAAAT TTGCTCTAGG TATTATTCAA GCAGGTTTAG GTTTTGGTGT TTTGGTGTTC
GGGGCACAAT TTCCCGATGA GGCCGGGAAA ATCAGTTTAT GGTGGTTAGT TTTAGCTTAC
CTAATTCATA CTACGGGTGA GTTGTGTCTT TCTCCGGTAG GTCTTTCGGC AGTGACTAAG
CTTGCGATAC ACCGTGTGGT AGGTTTATCA ATGGGCGTGT GGTTTTTGGC TACGGCGCTG
TCTGAAACGC TGGCCATGCG TTTAGGAAAA TTAGCGGCCA TTGATACCCA AGGTGGAGAG
CTTAATAGTG TGAGTGATAA TCTTATTATT TATACACAGC TGTTTGAGTT TTTAATGTGG
ATTGGTATTG GTACAGGCGT AGTGGTTTTA CTGATATCAC CGCTATTAAA GCGGGGTATG
CATGGCGTTC GCTAA
|
|---|
| Protein sequence | MDKTDSIDID KQVNTDELFG HPKGLYICFA TELWERFSFY GMKYLLLLYL TKYHLFSDGE
GLEVLGSYAG LVYTLPVIGG MLADRYLGMK KSVIFGGILL CLGHLLMAVE GHQAVQYAAG
TILTSDLTLN NGAVLSAGTL LTETIKIQDL AALNVFYFAL SLIVVGVGFL KPNISTIVGQ
LYSKDDPRRD SGFTIFYMGI NLGSFAATII CVYLGETYGW RYGFGAAGIG MLFGLVTFTK
GLKYLRGLAE PPDVAVLSEK VWGLISREYL IYLTAILSLS VFWLVIQHEP VVFAAQQVLL
VVSGVGLIGY AALKGSREEF QQMLVLMVLI GSTIVFWALF EQAAGSMTLF ADRVVERNIA
GIEITAGQFG ALNAGFIIML ALPFAALWVW LEKFRLNPNI PIKFALGIIQ AGLGFGVLVF
GAQFPDEAGK ISLWWLVLAY LIHTTGELCL SPVGLSAVTK LAIHRVVGLS MGVWFLATAL
SETLAMRLGK LAAIDTQGGE LNSVSDNLII YTQLFEFLMW IGIGTGVVVL LISPLLKRGM
HGVR
|
|---|
| |