Gene CPS_3277 details

Gene Information

• Locus tag: CPS_3277
• Symbol: uup
• ID: 3522523
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Colwellia psychrerythraea 34H
• Kingdom: Bacteria
• Replicon accession: NC_003910
• Strand: -
• Start bp: 3406270
• End bp: 3408207
• Gene Length: 1938 bp
• Protein Length: 645 aa
• Translation table: 11
• GC content: 39%
• IMG OID: 637285726
• Product: ABC transporter, ATP-binding protein Uup
• Protein accession: YP_269959
• Protein GI: 71282051
• COG category: [R] General function prediction only
• COG ID: [COG0488] ATPase components of ABC transporters with duplicated ATPase domains

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGAATTAT TAAGAATAGC CAATGGTGAG CTTGCCTTCG GCGAAGATAA GATTTTAAAT 
AAAGCAGATT TAAGTGTACA AACTGGCGAG CGTATCTGTT TAGTAGGGCG TAATGGTGCA 
GGTAAGTCTA CTTTAATGAA GATATTGATG GACTTGCAAG GTTTAGACGA TGGTCAAATT 
TTAAAGTCTA GTACCATGAA AATGTCAATG CTAGAACAAG ATCCACCAGA ATCGTCTGAT 
ATCTCTGTGT TTGATTATGT TGCTGAAGGG GTAAAAGAAA ACGCTGAACT TATCCGTCGT 
TATCACGCTT TAATTCACTT GATTGGCGAA GATCCAAGTG ATAAAAACCT TAACAAGTTA 
GCAAATGTGC AAGAAGAGCT TGAAAAAGCT AATGCTTGGT TAGACGAACA GCGCATTGAT 
CAAGCCATGA CTACCTTATC ATTGGATGCA GATGCTAAAA TTTGCGACTT ATCTGGTGGT 
TGGTTACGTA AAGTTGCGTT GGCTAAAGCA CTAGTTACCA GCCCTGATAT TTTACTACTC 
GATGAGCCAA CTAACCATTT AGATATTGAA AGCGTGTTAT GGCTAGAGCA ATTCTTAAAA 
GACTTTGCCG GTACTATTAT TTTTATCAGC CATGATAGGG CGTTTATCCG TGGTTTATCT 
ACTCGTATTT TAGATTTAGA TCGCGGTAAA TTAAAAAGTT ATCCGGGTGA TTACGATTTG 
TATATCGAGC AAAAACAGCA TGACTTACAA GTTGAAGATC AACAAAATGC GCTATTTGAT 
AAAAAATTAG CGGAAGAAGA AGTATGGATC CGTCAAGGGG TTAAAGCCCG TCGAACCCGT 
AATGAAGGCC GAGTTCGCTC ATTAGAAAAA CTTCGTCTTG AGCGCACAGC TCGTCGCGAT 
GTGCGTAATC AAAGCACTAT GAATATTACT CAGGGCGATC GCTCTGGCAA ACTAGTCTTT 
GAAGCGGAAG ATGTCAAAGT AGCCTTTGGT GATAATGTAG TGATTGAAAA CCTCAACCTA 
CTTATTACCC GTAATGACCG ATTAGCGTTA ATTGGTGCTA ACGGTACGGG CAAGTCAACT 
TTAATTAAAC TCATCATGGA AAAGCAAGCC GCTACAAGTG GTAAAATGCG CTCAGGTGTT 
AATTTAGATA TTGCTTATTT TGATCAGCAT CGTGAAGCCC TTGATTTAAA TCTAACAGTA 
CAAGAAATTG TCGGTGAAGG TAAACAAGAA GTTGTAGTGA ATGGCCGTTC TCGCCACGTA 
TTAGGTTACC TACAAGATTT CTTATTTAGC CCTAAAAGAG CACGTACACC AGTAAGAGCT 
TTATCAGGTG GAGAGAAAAA CCGATTATTA CTTGCTCGAC TCTTTTTACG CCCGAGTAAC 
TTGCTTATTC TCGATGAGCC GACCAACGAC CTTGATATTG AAACATTAGA ATTGCTAGAA 
GAAGTTGTTG CAAATTATGC TGGAACCGTT ATTTTAGTGA GCCATGATCG CGATTTTGTT 
AATAACTGTG TGAATACTTG TTTGTATTTT GACGGTACCG GACAGATAAA TCAGATTGTT 
GGCGGTTACG ATGATGTGGA TGATTACCTC GCTTTAAAAA AGACACAACG CCAAAGCATG 
GCTGAAGGTG TACAACAAAA AAGTAATCAA GAAAAGCAGA CTAAAAGTAG TGTTACTTCT 
GCAGCAAATA ATGTTTTGGC AGAGCCTGAA GCTAAGAAGA AAAAGCTATC GTTTAAAGAC 
GCTCGTGAGC TTGAAATGCT GCCTGGAAAA ATTGATGAAT TAGAAAGTTT GATTGATTCA 
CTGCAGGCAC AAGTTAATGA TGCTGACTTT TTTAGCCAAG ATGAGAAAAT AACACAAAAA 
GTTTTGAACC AGCTGGCAGA AAGCGAGTCA AACCTTGAAG TCGTTTATGC CAGATGGCAA 
GAACTCGATG ATGAATAA 

 

Protein sequence

MELLRIANGE LAFGEDKILN KADLSVQTGE RICLVGRNGA GKSTLMKILM DLQGLDDGQI 
LKSSTMKMSM LEQDPPESSD ISVFDYVAEG VKENAELIRR YHALIHLIGE DPSDKNLNKL 
ANVQEELEKA NAWLDEQRID QAMTTLSLDA DAKICDLSGG WLRKVALAKA LVTSPDILLL 
DEPTNHLDIE SVLWLEQFLK DFAGTIIFIS HDRAFIRGLS TRILDLDRGK LKSYPGDYDL 
YIEQKQHDLQ VEDQQNALFD KKLAEEEVWI RQGVKARRTR NEGRVRSLEK LRLERTARRD 
VRNQSTMNIT QGDRSGKLVF EAEDVKVAFG DNVVIENLNL LITRNDRLAL IGANGTGKST 
LIKLIMEKQA ATSGKMRSGV NLDIAYFDQH REALDLNLTV QEIVGEGKQE VVVNGRSRHV 
LGYLQDFLFS PKRARTPVRA LSGGEKNRLL LARLFLRPSN LLILDEPTND LDIETLELLE 
EVVANYAGTV ILVSHDRDFV NNCVNTCLYF DGTGQINQIV GGYDDVDDYL ALKKTQRQSM 
AEGVQQKSNQ EKQTKSSVTS AANNVLAEPE AKKKKLSFKD ARELEMLPGK IDELESLIDS 
LQAQVNDADF FSQDEKITQK VLNQLAESES NLEVVYARWQ ELDDE