Gene CPS_3165 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCPS_3165 
Symbol 
ID3519292 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameColwellia psychrerythraea 34H 
KingdomBacteria 
Replicon accessionNC_003910 
Strand
Start bp3297666 
End bp3298181 
Gene Length516 bp 
Protein Length171 aa 
Translation table11 
GC content39% 
IMG OID637285614 
ProductRNA polymerase sigma factor 
Protein accessionYP_269861 
Protein GI71279207 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00342065 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATGACAA AACAAGTTAG ATATGAGGCG CTAGTAAAGG CGCTACACGG TGATTTATAT 
CGCTATGCCT ATTGGCTATG CCACGAAAAA CAAGTGGCTG AAGATTTGGT GCAAGAAACC
TTTTTACGAG CTTGGCGTGC CCTTGATTCG CTTAAAGATG AAAAAGCGGC CAAGTCATGG
TTAATCACTA TTTTACGACG AGAGAATGCC AGACGTTTTG AGAGAAAACG TTTTGACATG
AGTGAATATG AAGAGGCAAG CATAACCGAT ACTAAATCAG TGACTACAGA GCAAGAGCTT
GAAAATCACT GGTTAAGGGA AAAAATTTCA CAATTGCCGC CTGAATATTC TGAACCGTTA
ATTTTACAAG TATTAGGTGG TTTTAGCGGA GAAGATATTG CCGCTATGTT AGATCTAAAT
AAAAATACAG TAATGACACG TTTATTTAGA GCAAGAAACC AGCTTAAAGA AGCTTTAGAA
GCAGAGCCAG TAAAACGAGG TATGTACAAT GGATGA
 
Protein sequence
MMTKQVRYEA LVKALHGDLY RYAYWLCHEK QVAEDLVQET FLRAWRALDS LKDEKAAKSW 
LITILRRENA RRFERKRFDM SEYEEASITD TKSVTTEQEL ENHWLREKIS QLPPEYSEPL
ILQVLGGFSG EDIAAMLDLN KNTVMTRLFR ARNQLKEALE AEPVKRGMYN G