Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | CPS_3165 |
Symbol | |
ID | 3519292 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Colwellia psychrerythraea 34H |
Kingdom | Bacteria |
Replicon accession | NC_003910 |
Strand | + |
Start bp | 3297666 |
End bp | 3298181 |
Gene Length | 516 bp |
Protein Length | 171 aa |
Translation table | 11 |
GC content | 39% |
IMG OID | 637285614 |
Product | RNA polymerase sigma factor |
Protein accession | YP_269861 |
Protein GI | 71279207 |
COG category | [K] Transcription |
COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.00342065 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATGACAA AACAAGTTAG ATATGAGGCG CTAGTAAAGG CGCTACACGG TGATTTATAT CGCTATGCCT ATTGGCTATG CCACGAAAAA CAAGTGGCTG AAGATTTGGT GCAAGAAACC TTTTTACGAG CTTGGCGTGC CCTTGATTCG CTTAAAGATG AAAAAGCGGC CAAGTCATGG TTAATCACTA TTTTACGACG AGAGAATGCC AGACGTTTTG AGAGAAAACG TTTTGACATG AGTGAATATG AAGAGGCAAG CATAACCGAT ACTAAATCAG TGACTACAGA GCAAGAGCTT GAAAATCACT GGTTAAGGGA AAAAATTTCA CAATTGCCGC CTGAATATTC TGAACCGTTA ATTTTACAAG TATTAGGTGG TTTTAGCGGA GAAGATATTG CCGCTATGTT AGATCTAAAT AAAAATACAG TAATGACACG TTTATTTAGA GCAAGAAACC AGCTTAAAGA AGCTTTAGAA GCAGAGCCAG TAAAACGAGG TATGTACAAT GGATGA
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Protein sequence | MMTKQVRYEA LVKALHGDLY RYAYWLCHEK QVAEDLVQET FLRAWRALDS LKDEKAAKSW LITILRRENA RRFERKRFDM SEYEEASITD TKSVTTEQEL ENHWLREKIS QLPPEYSEPL ILQVLGGFSG EDIAAMLDLN KNTVMTRLFR ARNQLKEALE AEPVKRGMYN G
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