| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_2849 |
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| Symbol | sbcD |
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| ID | 3520221 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | - |
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| Start bp | 2978974 |
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| End bp | 2980494 |
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| Gene Length | 1521 bp |
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| Protein Length | 506 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 637285302 |
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| Product | exonuclease subunit SbcD |
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| Protein accession | YP_269554 |
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| Protein GI | 71279760 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0420] DNA repair exonuclease |
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| TIGRFAM ID | [TIGR00619] exonuclease SbcD |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.482559 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGCATTA TTCATACCTC AGATTGGCAT CTTGGCCAAT ATTTTTACGG CAAAAGCCGC
GCCAATGAAC ATCAACAATT TCTTACCTGG TTATTAGCTC AAGTTACTCT GCATAACATT
GATGCGATTA TTGTAGCGGG TGATATTTTT GATACCTCAA CACCGCCAAG TTATGCCCGT
GAAATGTACT TTGATTTTAT TGCCAAGCTC CATGTGACCC AATGCCAGCT CATTATTTTG
GCCGGAAATC ATGATTCTGT CGCTATGTTG TCTGAGTCAC AAGCCGTATT GGCAAGCTTG
TCTACCCGTG TTATTACGCA GGTAATACCT GCGTCATTGA GTGAAGATGA GCTTGAAGAG
AAGGCACTTT CAAAACAGGT TTTTCCATTA CATGATGCTG ATGGGAAAAC CACAGCCATT
ATTTGCGCCA TTCCTTTTGT TCGTCCGCGT GATGTGATCA GAAGTCGAGC AGGGCAGTCG
GCAAGTGATA AGCAGCAAAG TTTACAACAA GCGATTAGCG ATCATTATCA GTATTTATAT
CAACAGGCAC GCAAGCAAGC TGACGCGTTT GAAAAAACGG AGGGCATTGC CTTACCCATT
ATAGCAACCG GGCATTTAAC GGCGCTTGGC GTATCAATAA ATGACAGTAA AAGTGATTCC
GTAAGAGATA TTTATATTGG CTCGTTAGAA GCTTTTCCAG CCAGTGCCTT TCCCCCAGCC
GACTATATTG CTCTTGGCCA TATTCACAGA GCACAACAGG TGGCGAAATC AGAACATATT
CGTTATTGCG GCTCGCCTAT TGCGTTAAGT TTTGATGAAG CCAAGCAAGA TAAACGAGTG
CTGATGGTTG AGTTTACGTC AGGGAAACTT AATCAAGTTG AAGCGCTTAT TGTGCCGTGT
TTCCAACCAC TATACATGGT GAAAACATCG GTAGATGAGC TTGAAACTTC ACTTCAAGAA
ACACTGGTCG CATTTGAAGA ACGCCAAGTA GCGGAAAAGT TTCCTGCGAG TGTTAAGGCT
TGGCTTGATA TTGAAATTGA TAATGGTGAT CACTTAAGTG ATTTATCGCA GCGAGTCACT
GAACTAGCCG TTGATATGCC TTTTGAAGTG TTATTGGTTC GTCGATGTAA AAAGGCGCGT
CAACGACGAC AAGCGCAATT ATCGCAGCAA GATAACAGCA CCTTGAGTGA GTTATCGTTA
ACAGAAGTCT TCGATTCACG CTTATCTCAA CTTGAATGGC AAACGGATGA AGAAGTCGCA
CGTAAAACAC GGTTAACACA ATTATTTACA GAACTGTCGG TGGAAATGAA ACAAGCCGCT
TCTATTGCGA ATCAAAAAAG TGATGCGGAT AAAGCGCTAA TTACTAGTTC ATCAGCCCAG
GCAGAGTCGA CATCGCAAAG TGCTTTATCA GAAGAAGAGA GCACAGAAGC TGAAAAAGAC
AGTGTTATCA CCGAAAAAGA CAGTGCTATC GCTGAAAAAG ACAGTATGAC GCCTGAATCA
CTAGAGCAAC ACAATTCATG A
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| Protein sequence | MRIIHTSDWH LGQYFYGKSR ANEHQQFLTW LLAQVTLHNI DAIIVAGDIF DTSTPPSYAR
EMYFDFIAKL HVTQCQLIIL AGNHDSVAML SESQAVLASL STRVITQVIP ASLSEDELEE
KALSKQVFPL HDADGKTTAI ICAIPFVRPR DVIRSRAGQS ASDKQQSLQQ AISDHYQYLY
QQARKQADAF EKTEGIALPI IATGHLTALG VSINDSKSDS VRDIYIGSLE AFPASAFPPA
DYIALGHIHR AQQVAKSEHI RYCGSPIALS FDEAKQDKRV LMVEFTSGKL NQVEALIVPC
FQPLYMVKTS VDELETSLQE TLVAFEERQV AEKFPASVKA WLDIEIDNGD HLSDLSQRVT
ELAVDMPFEV LLVRRCKKAR QRRQAQLSQQ DNSTLSELSL TEVFDSRLSQ LEWQTDEEVA
RKTRLTQLFT ELSVEMKQAA SIANQKSDAD KALITSSSAQ AESTSQSALS EEESTEAEKD
SVITEKDSAI AEKDSMTPES LEQHNS
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