| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_2787 |
|---|
| Symbol | |
|---|
| ID | 3519092 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | - |
|---|
| Start bp | 2908627 |
|---|
| End bp | 2909544 |
|---|
| Gene Length | 918 bp |
|---|
| Protein Length | 305 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 637285240 |
|---|
| Product | apbE family protein |
|---|
| Protein accession | YP_269499 |
|---|
| Protein GI | 71278290 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG1477] Membrane-associated lipoprotein involved in thiamine biosynthesis |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.778889 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAA AAAGAACACT TAAATACAGC AACCAACAAG ACAGCCATAG CATTAGTTTT
AATGCTATGG CTAGTCCGTG TGAGGTGATA GTCCAATCTC AAAATAAGCG GTTAGCAGAG
CAAGTTGCTC AATGTGTTAG CCGTGAGGTT TGGCGTATTG AAGACAAATA CAGTCGATAT
GATAGCAAAA GTGTTTGCAG TCAAATAAAT AGCAATGCCG GTAACAGAAT TGCCATTGAT
GAAGAAACTT TCTTATTACT CAATTTTGCT GAGCAATGTT ATCAATTAAG CGATGGCCTT
TTTGATATTA GTTCAGGTGT GCTGAGGAAA GTGTGGTCTT TTGATAGCTT AAGTGGGGAA
TGTCAACATT TTCCAAGCGC AACCGAGGTA AACAAATTGC TTAGTTTTGT TGGTTGGAAT
AAAGTCGATT ATGATCAACA AAGCATTACT TTACCACAAA ATATGGAACT AGATTTTGGT
GGTATAGGTA AAGAATACGC GGTGGATCGC TCTATATTAT TAGCTAAAAA AATAACGGAT
GAACCTATTT TAGTCAATTT AGGGGGCGAT TTGGCTGTTA CAGGTCCAAG ACTTAATGAT
CAAGCATGGC AAGTAGCGAT TGAACACCCT GACAGTGATG TACTTGGCCA GCCACAAGAT
ATGATTGTGG CACTTAACAA AGGGGCGTTA GCCACTAGTG GAGATGCCCG ACGATACTTG
ATTAAAGAAG GTATTCGTTA CGGACACGTG TTAAATGCTA CAACCGGATG GCCGATAATC
AATGCGCCAC GCTCAATTAC AACCGTTGCA CCTCAATGTA TTCAAGCAGG AATATTAGCA
ACGTTGGCGT TGTTGCAGGG TGAACATGCA GAACACTTTT TAACGGAACA AGACATTACT
TTTTGGGCGA GAAGGTAA
|
|---|
| Protein sequence | MKKKRTLKYS NQQDSHSISF NAMASPCEVI VQSQNKRLAE QVAQCVSREV WRIEDKYSRY
DSKSVCSQIN SNAGNRIAID EETFLLLNFA EQCYQLSDGL FDISSGVLRK VWSFDSLSGE
CQHFPSATEV NKLLSFVGWN KVDYDQQSIT LPQNMELDFG GIGKEYAVDR SILLAKKITD
EPILVNLGGD LAVTGPRLND QAWQVAIEHP DSDVLGQPQD MIVALNKGAL ATSGDARRYL
IKEGIRYGHV LNATTGWPII NAPRSITTVA PQCIQAGILA TLALLQGEHA EHFLTEQDIT
FWARR
|
|---|
| |