| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_2768 |
|---|
| Symbol | recB |
|---|
| ID | 3520210 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | - |
|---|
| Start bp | 2883240 |
|---|
| End bp | 2887100 |
|---|
| Gene Length | 3861 bp |
|---|
| Protein Length | 1286 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 637285221 |
|---|
| Product | exodeoxyribonuclease V, beta subunit |
|---|
| Protein accession | YP_269480 |
|---|
| Protein GI | 71279749 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1074] ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) |
|---|
| TIGRFAM ID | [TIGR00609] exodeoxyribonuclease V, beta subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTCAAT TTGATACTTC AGACTCTCAA CAAACAGCGA CTAAAGATAA TCATCAAGAA
GTAACACTAC AAAATCTTGA TGCAGCGACC ATTGAGTTAA CGGGTAAACA TCTTATTGAA
GCCAGTGCTG GTACAGGTAA AACCTATAAT ATTACGCGTA TTTATCTACG CTTATTACTT
GAACGTGAGT TAACGGTTGA ACAAATATTG TTAATGACGT TTACCAAAGA TGCGACTCAA
GAATTACGAG GGCGAATTGA TGCTTTTATT CGTTTAGCCC TCAGTGACTG GGATAGTTTG
TGTTTAAAAG ACGCTTACTT TGCCACACTT GCTCAACGTA TTGAAAAAAA ACAGCGAGAA
TTTTTACTCA AACGCGCACT ACTGTTTTTA GATGAAGCAG CTATTTTTAC TATTCATGGT
TTTTGTCAGC GGGTATTAAA TCAATATGCG TTTACCAGTG GTTTACCGTT CAATGCCAAT
ATGGCAGCCA ATTCGTCTGA AATAACTCTA CAAGTTTGCC AAGATTGGTA TCGCAGTTTA
GCTAAGTCTG ATCATGAGTG TTTTATGTTG CTAGCAAGTT ATTGGGCAAC ACCAGATAGC
TTTTTATCCA GTTTTAGTAA AGCCATAGGT CACACCAGCA CTTTATCCGT TGTGGATGTC
GAAAGTATTG AGGCTGAATT TATTGTCTTA GTACGTCTGG CAGCGCAAAC ATTAACGGCC
AACAGTGATT TATTTGAAAA TGGCTTAATA CTGGTTAAAA AGGGCGCAGA CCAAGAAAAA
AGACGCGATG AGTTGTCTCA ATTAAAAATC TGGCTTGAGA GCATTATCAG CAAAGAGTTA
TCACTGCTTG ATGTTGGCGA GGGTAAGGTA AAAATGCCAG ATGGTTTTTT TGATGGCAAA
CGTTATGCAA GATCGACCTA TAAAGCTGAG TTACTAGAAG CTTTTGCGCC GGTAAAAGAA
GTTAAAGAAC AAGTTAAGAA AATAGCGAAC AATATCAACA AAGCTAGAGC GTACGGCATT
GTTAAGTCTG GTATTTACAT TATTAGACAG CAAGTCATTG AGCAGAAAAA AGCACTTAAT
TTATTAGACT TTGACGATCT TATTAATACA TTAGCTAATT GTCTTCAGTC GGATAGCTCA
GGTGATGAAC ATTCTCAGTT ACTCGCTAAA CAGCTACTCG CACAATACCC TGTAGCCTTA
ATAGATGAGT TTCAAGATAC TGACCCTAAG CAATTCGGCA TATTACAATC GATCTATTAC
GGCGACAATG CTAAAAAAGC TAATGCCGGT TTATTCCTTA TTGGCGATCC AAAGCAGGCT
ATTTATGGTT TTCGTGGTGG TGATATTTTT GCCTATCTCA ATGCACGTAG CGGCTGCGAC
CACCACTGGC TGATGGATAC TAATTGGCGT TCAACGCCAC AAATGATTGA AGGTTATAAC
CAGTTTTTTA CCTACAAACG TAATGGGTCT TCATCTGAAG AAACGGTGTC TAACGAAGTA
AATAAGCAAC AAAGTGAGAG TGTCTTTGGT TTTGGCATAC CTTATTTACC AGTACTAGCA
GGAAAGAAAT CGGCCCAAGC CCAACAAGTT ATCTTAGACA GTGATAAAGC ACTGCAATTT
ATTCATTTTA CTAATGATGA AACATCCAAT GATACTAACC CGCAAGGTGA CAAAGTTAGT
CAAGGTAGTC GTCCTATGTT GGCTAACTGG TGTGCGAATG AAATAGTGAC TCTGTTGGCC
TCGAAAGAGC AAACAGGTAA AGTAAATCCA AAAGACATCG CCATACTTGT CAGAGATGGT
GCTGAAGCGC GAGATATTAA ACATGCCCTG CAACAAGCGG GGCTTGATAG CGTTTTCTTA
TCAGATAGAG CTAATTTATT TCATTCTCAG CAAGCTAAGC AATTATTAGG TTTACTCAAA
GGGGTATTAT TACCTGAAAA TGAACGATTG TTTGTTGCCG CACTGTCATG TGGATTATTA
GGTTTTGATG CTAAAAAGCT ACACCAATTA CAGCAAGACG AAATGGCTTA TCAAACGTTG
AAGTTTGCTT TTGTTGATTA TAGAACGCAA TGGCAACGAC AAGGTTTTAT CACCATGGCG
ATAAACTTGA TGCACAACTT GCTTGATGTT CCTCAAAACA ATAAAGATCG TTGTTTAACC
AATGTGCTGC ATTTATTTGA GATATTACAA GCGGCTAGTG TTCGATTAAG TCAAGGACAA
GAGCTTCTGC ATTGGTTTGA ACAGCAGTGT CACCTTGAAA CCAATGATGT TGAAGCCGAG
CTACGTTTAG AGAGTGATGG TGATCTTATT CGTTTAATTA CTCAACATGG CTCTAAAGGA
CTTGAATATC CTTATGTCTT TATTCCATTT GCTTGTCGTC ATAAAGATCC GTTGAAGTTT
GGCAACAAGT CAGTGAGTTA TCTTGAATAC CACGATGCAA ACGGTAAGCT GTGTTTAAGT
CTTGATGGCT CAAAAGAAGC CAAGAAAGCT ATGAGTAATG AAGCTTATGC CGAAAGTATC
CGTTTGCTTT ATGTGGCGAT AACCAGAGCC GAACGAAGAT GTTACGTACT GTGTTGCGCC
TTTGATGCAT ATCATCTATC ACCTTTAGGC AAAACACTGC AGTTTCAAGA ACAAGAGAGC
ATCATTAAAC CGTTGCAAGT ACTTAAGGCA AGTGCTGAGC ACGCTATTGG TATTCGTGAA
GTATCACTTG ATTGTTCTAT TGACCTTTAC CTTGAAAAAA ATGATGAAGC CGCGCTACAT
CAACCGAAAA ATAGCCCACA AGAGTTTGCC AATACCGAAG TCAGTAAATT CATTGGTAAG
ATAGAGCGAG ATTGGTGGTT GAGTTCATTT ACCGCCTTAA GCCGTAATAT CCGCCATGCA
GGTGTTTCTA ATCCAGATAG AGATACTACT GACATAGCGA ACAGGCAATT AGATACTGAT
TCCGAACATA CTGATATCGA ACTACTTAGC GCTGAGCAAA TTTGCTTTAA ATTATCCAAA
GGTGCTCATA CGGGTAACTT ATTACACGAT ATTTTAGAGC AAACTGATTT TTCTGAACCA
GATTGGCAAG AGAGTCTGGA AAAACCTTTA TTAGCCTATG GTGAGTTAAA CGCGAGTAAC
GCTAACAGTA TAAGTACTTC ATTTACCTCA GATGATTTAA TTCAGTGGTT AGAACAAGTG
ATTAGCGCAC CTTTCATTTC GAGTCACCAC AGTGCACTCA CTACCGATAG TGAAAATGCT
GGCTGTCTAG CCGATATTGC TTTCAATAGA ACGCTACGTG AAAGTGAGTT TTATTTTCCT
ATGCAAGGCG AGGGTACTAA CGCTTTAGCT AATTTGCTAA CCGATCACCG AAATAGGGCA
GAGCGTACTG ATACTGGCAA TAGTATTAGT ACTGGTCGGA ATAGTGGGAT AAGCAAGACA
TTAAACAACA CCTTAAAATA TCCAGTAATG TTACCTAGCT ATAAAAAGCT CTCAGGCATG
ATGCATGGTT TTATCGATTT GATCTTTGAA TACCAAGGGA AATATTATCT GTGTGATTAT
AAATCTAGTC ACTTAGGTGA TAGCTTTCAA GATTATCAGT TTGATGCATT GCTCGATAAT
GTTGAGAAAA ATTATTATGA CTTACAATAC TTAATTTACT CATTAGCATT ACATCGTTAT
TTAAAACAAA CTTTGGTAGA TTATGATGTT AATCAGCATT TTGGTGGTGT GTATTATTTA
TATCTACGTG GTATGACAAC TGAGCCTGAA CATAAAGGTG CAGGGGTTTA TTATCGAAAA
ATTACAGAGC AAGAAATCAA TAATTTAGAT GCGCTCTTCT CTAATAAAGA AAGTAATGAA
AAATGCAATG AGGAAGCGTA G
|
|---|
| Protein sequence | MTQFDTSDSQ QTATKDNHQE VTLQNLDAAT IELTGKHLIE ASAGTGKTYN ITRIYLRLLL
ERELTVEQIL LMTFTKDATQ ELRGRIDAFI RLALSDWDSL CLKDAYFATL AQRIEKKQRE
FLLKRALLFL DEAAIFTIHG FCQRVLNQYA FTSGLPFNAN MAANSSEITL QVCQDWYRSL
AKSDHECFML LASYWATPDS FLSSFSKAIG HTSTLSVVDV ESIEAEFIVL VRLAAQTLTA
NSDLFENGLI LVKKGADQEK RRDELSQLKI WLESIISKEL SLLDVGEGKV KMPDGFFDGK
RYARSTYKAE LLEAFAPVKE VKEQVKKIAN NINKARAYGI VKSGIYIIRQ QVIEQKKALN
LLDFDDLINT LANCLQSDSS GDEHSQLLAK QLLAQYPVAL IDEFQDTDPK QFGILQSIYY
GDNAKKANAG LFLIGDPKQA IYGFRGGDIF AYLNARSGCD HHWLMDTNWR STPQMIEGYN
QFFTYKRNGS SSEETVSNEV NKQQSESVFG FGIPYLPVLA GKKSAQAQQV ILDSDKALQF
IHFTNDETSN DTNPQGDKVS QGSRPMLANW CANEIVTLLA SKEQTGKVNP KDIAILVRDG
AEARDIKHAL QQAGLDSVFL SDRANLFHSQ QAKQLLGLLK GVLLPENERL FVAALSCGLL
GFDAKKLHQL QQDEMAYQTL KFAFVDYRTQ WQRQGFITMA INLMHNLLDV PQNNKDRCLT
NVLHLFEILQ AASVRLSQGQ ELLHWFEQQC HLETNDVEAE LRLESDGDLI RLITQHGSKG
LEYPYVFIPF ACRHKDPLKF GNKSVSYLEY HDANGKLCLS LDGSKEAKKA MSNEAYAESI
RLLYVAITRA ERRCYVLCCA FDAYHLSPLG KTLQFQEQES IIKPLQVLKA SAEHAIGIRE
VSLDCSIDLY LEKNDEAALH QPKNSPQEFA NTEVSKFIGK IERDWWLSSF TALSRNIRHA
GVSNPDRDTT DIANRQLDTD SEHTDIELLS AEQICFKLSK GAHTGNLLHD ILEQTDFSEP
DWQESLEKPL LAYGELNASN ANSISTSFTS DDLIQWLEQV ISAPFISSHH SALTTDSENA
GCLADIAFNR TLRESEFYFP MQGEGTNALA NLLTDHRNRA ERTDTGNSIS TGRNSGISKT
LNNTLKYPVM LPSYKKLSGM MHGFIDLIFE YQGKYYLCDY KSSHLGDSFQ DYQFDALLDN
VEKNYYDLQY LIYSLALHRY LKQTLVDYDV NQHFGGVYYL YLRGMTTEPE HKGAGVYYRK
ITEQEINNLD ALFSNKESNE KCNEEA
|
|---|
| |