| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_2429 |
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| Symbol | |
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| ID | 3522932 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | + |
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| Start bp | 2542247 |
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| End bp | 2543572 |
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| Gene Length | 1326 bp |
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| Protein Length | 441 aa |
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| Translation table | 11 |
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| GC content | 37% |
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| IMG OID | 637284884 |
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| Product | HlyD family type I secretion membrane fusion protein |
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| Protein accession | YP_269145 |
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| Protein GI | 71282458 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.281145 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATAACC GCCAACTTGC TAACCGTCAA TGGCCCGAAC ATGAGTTTTC TGATGCTATT
GAAGCCCCGA TAGAACGAAA AGTGATCAGA AATATAACCT ATATGATTTT AGGCTCAATA
TTTTGTTTAT TACTGTGGTC TATTTTTTCA AAAGTTGAGG AAATAGCGAA AGCACAAGGA
CAGGTTGTTC CTCTTGGACA TCGACAAGTT ATTCAAAGTC AGTTAGGCGG TACTATTAAT
GCGATTGTTG TCGAAGAAGG GGACGTGGTC AAAAAAGGCG ATGTTTTAGT CAATTTTATT
GCTATTAATA GTCAATCTGC AAAAGAAGAG CTGGCAAGTA AATATGCTAA TTTGATGATG
AAAAAAGAAA GATTATCGGC TTTTAAAGAA AGACGAGAGG CCGATTTTAA TGATTATAAC
GAAGTATATC CAAGGTTAGC ACTTCAACAA CGTCAAGCAT TAGGTAGTAT GAATAGTGAG
CTTGTTGCTA TTGAGTCATT ATCAAAATCT GACGTGGCTA AATCTCAAGC AGAATATCAT
GCGATAGAAA AAGAAATTCC GGCATTAAAA GATCAAATTA TTGCCTCTGA AAAAACATTA
GCAATGATGA CAACCCTTGC TAAAACGGGT GGTATCTCGC AGTTAAAGCT TTTAGAAACC
CAACAAAAAC TTGATTCATA CCAACGTGAA TTGAGTGTTT TAGAAGGGAA AGAGCAAGTG
CTGTCTAAAA ATATGTCTAA TTTAAATGAG CAACTTAATA ATAAGAAAGC GTCTCTCTTA
AAACTTGTAG GTGAAACATT AACAGAAACA CAAGGTGAAA TTCTTGCCGT TGAAGCAAGA
CAAAGATCAT CAGATTCAGA TGTTTCACAA AGCACTGTTG TTGCGCCTGT TAATGGCATT
ATTCAGTCAA TACCCAGTAG TAGCGTTGGC AGTGTTATTC CTCCTGGGGG GACAGTAGCA
GTTATTGTCC CCGTTACAGA GAAAGCATTG CTGGAAGCTA AATTATCCCC AAGAGATATT
GGTTTTGTTT CTATCGGTCA AAAGGCCAGA ATTAAAATCG ATGCCTTTGA TTACAGTCGA
TATGGCGCTT TAGACGGTAT AGTTAAAAAA ATATCACCAA GTACAGATGC AGATGAAAGA
GGTGGTGTTT TTTATAAGGT GCAAATTGCC ATTGATAAAC CCTATTTTGG CAAAAATCCT
GGTGACTTAG AGTTAATTCC AGGCATGACA GGTGAGGCTG ATATTGTTAC GGGTGATAAA
ACAATATTTC AATATTTATG GAAACCAGTA TTTACTAACG TAACTAGTGC TTTTGGTGAA
AGATAA
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| Protein sequence | MNNRQLANRQ WPEHEFSDAI EAPIERKVIR NITYMILGSI FCLLLWSIFS KVEEIAKAQG
QVVPLGHRQV IQSQLGGTIN AIVVEEGDVV KKGDVLVNFI AINSQSAKEE LASKYANLMM
KKERLSAFKE RREADFNDYN EVYPRLALQQ RQALGSMNSE LVAIESLSKS DVAKSQAEYH
AIEKEIPALK DQIIASEKTL AMMTTLAKTG GISQLKLLET QQKLDSYQRE LSVLEGKEQV
LSKNMSNLNE QLNNKKASLL KLVGETLTET QGEILAVEAR QRSSDSDVSQ STVVAPVNGI
IQSIPSSSVG SVIPPGGTVA VIVPVTEKAL LEAKLSPRDI GFVSIGQKAR IKIDAFDYSR
YGALDGIVKK ISPSTDADER GGVFYKVQIA IDKPYFGKNP GDLELIPGMT GEADIVTGDK
TIFQYLWKPV FTNVTSAFGE R
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