| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_2120 |
|---|
| Symbol | |
|---|
| ID | 3521744 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | + |
|---|
| Start bp | 2209304 |
|---|
| End bp | 2211733 |
|---|
| Gene Length | 2430 bp |
|---|
| Protein Length | 809 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 637284578 |
|---|
| Product | putative ABC transporter, permease protein |
|---|
| Protein accession | YP_268846 |
|---|
| Protein GI | 71281273 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0577] ABC-type antimicrobial peptide transport system, permease component |
|---|
| TIGRFAM ID | [TIGR03434] Acidobacterial duplicated orphan permease |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.5337 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATATGGC AAGATTTTAA ATATGCGATC AGGTTGTTAT CAAAAAAGCC TGGCTTTACT
GCGCTTACTA CTTTAGTGAT GGCAACAGGC ATAGGTTTGA GTGTTTATAT GTTCTCGTTT
TTTCACACTA TTTTGTTTAA AGACTTAGAC TTTCAAGATG GGGCCTCTCT CGTCATGGTC
AGTGGCTCTA TAAATGGCAA AGAAGATGCT TATAGAATTA ATGCCTTAGA TTATGCTGAA
ATCAAAAGTA GCGTAAAGGG TTTAAAAGAG TACGGTGGTT ATAACAACGC TAATGTTGTT
GTTTCAGCAA CTGAAGGGGC GATAAGATTT CCGGCGATAA TGGCACAAGC GAATATATTT
CAACTGACTC GCACAAAGCC TATTTTAGGA CGAGAATTTA GGGCTGAAGA TGAAAAATCT
GGCTCTGAAA AGGTTGTTGT TATTGGTTAT GATCTTTGGC AAAACCAGTT CAGCGGCGAA
AATGATGTAC TCAAACAAAA CATGCGCATT AATGGTGAAA AACACAACGT GGTGGGTGTG
ATGCCACAAG GATATTTGTT CCCTCGAAAT GCCCAGATAT GGTTACCTTT ACAAATTGAT
CCTAAACAAT TAGTCCGAGA AAATAGCACA ACATTACATG GTTTAGCACA CTTAGAAGAT
GGCGTGACTA TGGCTGAGGT AAATCGTGAA CTAAGCGTTG TTATGAAACG AATTGAGAAT
CAACACCCAC AAACAAATAC TGGTATTAGT GCTCATGTCA CATCAATTCC GGGTGTTGGT
GGCGCTGATG GTGCTCCGGT CATTTATACC ATGCATACTG TTGCCTTGTT AATTTTGCTG
TTGGCGTCGA TAAATGTTGG AAATTTATTA TTATCGCGCG CATTAGAGCG TGGGAAAGAA
ACAGCAATTA GAGTCGCGTT AGGCGCACCT AGGTCACGAT TAATTATTCA GATGTTATGG
GAAAGTACCA TAATTTGCAC GCTTGGCGGA ATGATAGGTT TTTTAGTTAT GGCCTGGGGC
TTGGAGATTA CAGAGCCAAT TGTAGCTACT TTTTTTGCAG ACCCATTAGC ATTTTGGTGG
GACTTTGGCA TTGATACTTA TACGGTAACA CTGTTTTTAA CCATCCTTAT TAGCACTATT
TTTGTCACCG GATTTTTGCC TGCTTGGAGA AGTACAGGGG GTGACTTTAA TGCCGTACTA
CGAGATGGTA CTCGAGGCGC ACAAGGGAAG AAGGCAGGTC GCCTGAATCG TTTTCTGGTT
ATTAGTGAAA TATTTATTTC TATGACGGTA TTAATATCCT CTGCCGTTAT GGTGCAATCT
GCTTATGAGC AAACCAATAG TGATATGGGG GCTGATACCG AAAATAGTTT AGTGGCAAGT
GTTTTATTAC CTGCAGCGAA TTATGATACG GATGCTAAAA AGGCACACTT TGCCAAAACG
TTGCAATCAC GTTTAGAAAA CAGTGCTTCA ATTGAAGCGG TAATGTTAGC AACGTCGTTA
CCAGGGCACT ATAGTTCAAT CTCGAAAGTC ATTATAGAAG GTAAAGAATA TAGCAAGGAT
AGTAACAATA GTTATCCGAG TGCTAATGAC ATTGCCACTA TGCCAGGCTC TTTGGCAAAG
CTGGGCGTTG AATTACGCCA AGGGCGTTAT TTTAACAATA GTGATGATGG TTTGGCTAAA
GCGACAGCTT TGGTTTCAGA AAGCTTTGCC AAGCGCCATT TTCCTGAGCA GGGTGCTTTG
GGGAAAAGGT TTCGTTTAGC GAAGACAACG CAAGACAACA TTGAATGGGT GACTATTGTC
GGCATAGTTG AGCATACGAT TCAAGGTAAC AGAGACGGCG ATGCAGCAAG TATGCCTGCA
ATCTATAGAC CGTTAACTCA AGCACCACGA AATCAGCTTA CTATTGCAAT GCAATTAAGT
TCAAAAGGAA GCCTTGCGGT ACAGCATTTG CGTAAGACTT TACAAGGTAT TGATAGTGAA
CTAGCTTCAT ACCGTATTGA AACTTATCAA GCAAGTAACG ATAGAATTAC AGCGCCGGTA
GTTTTTATCA GTAGTTTAAC GGCAATATTT GCTATCGCAG GTGTGGTGCT AGCAGCAAGT
GGTATTTATG GTGTTATGGC AAATATGATA AGCCAACGAA CGCAGGAAAT AGGCATTAAA
CGTGCGTTAG GTGCTGATGA GCAAAGAATC AGCAGAGAGT TTGTCTTTGC TGGTGTGAAA
TTATTACTTT GGGGTGGTAT ACCCGGTATT GTAGCCGGAG GTTTTATGGG CTTTGCTATG
GCGCAAATGT TTGGTACTTC ATATTCGTCA CTAGTATTAA TAGTAATTAT TATGGTGAGC
ATAGTGGTTG CTACTGTGCT GATAGCGACT TACTTACCAA CAAAAAATGC GTTAAGGTTA
GAGCCAAGCC AAGCATTACA CTATGAATAA
|
|---|
| Protein sequence | MIWQDFKYAI RLLSKKPGFT ALTTLVMATG IGLSVYMFSF FHTILFKDLD FQDGASLVMV
SGSINGKEDA YRINALDYAE IKSSVKGLKE YGGYNNANVV VSATEGAIRF PAIMAQANIF
QLTRTKPILG REFRAEDEKS GSEKVVVIGY DLWQNQFSGE NDVLKQNMRI NGEKHNVVGV
MPQGYLFPRN AQIWLPLQID PKQLVRENST TLHGLAHLED GVTMAEVNRE LSVVMKRIEN
QHPQTNTGIS AHVTSIPGVG GADGAPVIYT MHTVALLILL LASINVGNLL LSRALERGKE
TAIRVALGAP RSRLIIQMLW ESTIICTLGG MIGFLVMAWG LEITEPIVAT FFADPLAFWW
DFGIDTYTVT LFLTILISTI FVTGFLPAWR STGGDFNAVL RDGTRGAQGK KAGRLNRFLV
ISEIFISMTV LISSAVMVQS AYEQTNSDMG ADTENSLVAS VLLPAANYDT DAKKAHFAKT
LQSRLENSAS IEAVMLATSL PGHYSSISKV IIEGKEYSKD SNNSYPSAND IATMPGSLAK
LGVELRQGRY FNNSDDGLAK ATALVSESFA KRHFPEQGAL GKRFRLAKTT QDNIEWVTIV
GIVEHTIQGN RDGDAASMPA IYRPLTQAPR NQLTIAMQLS SKGSLAVQHL RKTLQGIDSE
LASYRIETYQ ASNDRITAPV VFISSLTAIF AIAGVVLAAS GIYGVMANMI SQRTQEIGIK
RALGADEQRI SREFVFAGVK LLLWGGIPGI VAGGFMGFAM AQMFGTSYSS LVLIVIIMVS
IVVATVLIAT YLPTKNALRL EPSQALHYE
|
|---|
| |