| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_2003 |
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| Symbol | |
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| ID | 3522995 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | - |
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| Start bp | 2072725 |
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| End bp | 2074332 |
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| Gene Length | 1608 bp |
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| Protein Length | 535 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 637284465 |
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| Product | choline/carnitine/betaine transport family protein |
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| Protein accession | YP_268733 |
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| Protein GI | 71282520 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1292] Choline-glycine betaine transporter |
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| TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCAAAA ACAAAGAAGA TACAGATAAA GATAAGGAGC TTGTTGTTGA AAAGTCAGTT
TACCGATCTG ACCACGTGAT TGGAGAGAAT AACGTAGAAA TAATGGGCAT GGACTTACAT
AATCCTGTGT TCTTTTTCTC ATCTACACTT ATTGTTGTAT TTGTTCTATT AACCCTACTA
TTCCCTGAAT TAGCCAAACA ATCTTTCGAT GCATCAAAAA GTTGGTCTAT CGACCATTTT
GACTGGCTAT TCATTGTCAG CGGTAACCTT TTTGTCCTTT TTTGTTTAGC CTTGGTTGTT
TCACCTTTTG GAAAAATCCG ACTCGGTGGT ACTGAAGCAA AACCAGACTT TAGCAAATTG
TCTTGGTTTT CTATGCTATT TTCTGCCGGA ATGGGCATAG GTTTAATGTT TTGGAGTGTT
GCAGAGCCTG TTGGTTACTT CACTAATTGG TATGGCACCC CCCTAAATAC GGTTGCCGGT
ACTCCCGAGG CAGCTAAAAT GGCGATGGCG GCAACAATGT ATCACTGGGG ATTACACCCA
TGGGCCATCT ATGCCGTTGT AGGCTTGTCT TTAGCTTTCT TCACTTTTAA CTGCAACATG
CCATTAACCA TCCGCTCTTC TTTTTACCCA TTGTTAGGCG AGCGAGTTTG GGGCTGGCCG
GGCAATGTCA TTGATATTAC CGCGGTATTA GCTACTATTT TTGGTCTCGC TACTTCTTTA
GGTTTTGGGG CACAACAAGC GGCTGGAGGT TTAAGCTTCC TATTCGATAT ACCCAATACC
ATAAACACTC AGATTGCCAT TATATTTGGC GTTACCATGG TCGCCATATT CTCAGTGACT
CGAGGCTTAG ATGGTGGGGT TAAACTATTA AGTAATATCA ATATGTCACT TGCGGTTGTA
TTAATGTTAT TTGTTATTAT TACGGGCTCT ACTTTAGTGA TTATTAATGG TGTTGGCACA
ACCCTGCTTG CCTATGCCGA AAATATTATT CCGTTAAGTA ACTGGATTGG TCGTGAAGAC
GAAACGTTTT ACCATGGCTG GACTGTATTT TATTGGGCTT GGTGGGTTTC TTGGTCACCG
TTTGTCGGTA TGTTCATCGC AAGAATTTCG CGCGGCAGAA CGGTTCGTGA ATTTATATTA
GCAGTATTAT TTGTTCCTAC TTTACTTACA TCAGTATGGA TGGCAACCTT TGGCGGCATG
GGTCTTGAAC AAGTACAAAA TGGTGTAGGT CAATTAGCTC AAGGCATTGG TGATAGCTCG
TTAGCACTAT TTCAAATGTT AGAGAACTTG CCTTTAAGCA ATGTTACTTC GTTCTTGGCG
ATTGTCTTGG TATTAATTTT CTTTGTCACT TCATCAGATT CAGGCTCTTT AGTCATAGAC
AGTATTACCG CTGGTGGTAA AGTAGATGTG CCGGTTCCAC AAAGAATATT CTGGGCAGCT
ATCGAAGGTG TTATTGCTGC TGCATTATTA TTTGGTGGTG GCAAAGATGC ATTGGGTGCT
TTGCAAGCTG CAGCCATCAC AGTCGGTTTA CCTTTTACCG TACTATTAAT TGTTATGTGT
TTCGGTTTAT TCTTGGGATT AAAAAGAGAG TATAAAAAAC TAAGTTAA
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| Protein sequence | MSKNKEDTDK DKELVVEKSV YRSDHVIGEN NVEIMGMDLH NPVFFFSSTL IVVFVLLTLL
FPELAKQSFD ASKSWSIDHF DWLFIVSGNL FVLFCLALVV SPFGKIRLGG TEAKPDFSKL
SWFSMLFSAG MGIGLMFWSV AEPVGYFTNW YGTPLNTVAG TPEAAKMAMA ATMYHWGLHP
WAIYAVVGLS LAFFTFNCNM PLTIRSSFYP LLGERVWGWP GNVIDITAVL ATIFGLATSL
GFGAQQAAGG LSFLFDIPNT INTQIAIIFG VTMVAIFSVT RGLDGGVKLL SNINMSLAVV
LMLFVIITGS TLVIINGVGT TLLAYAENII PLSNWIGRED ETFYHGWTVF YWAWWVSWSP
FVGMFIARIS RGRTVREFIL AVLFVPTLLT SVWMATFGGM GLEQVQNGVG QLAQGIGDSS
LALFQMLENL PLSNVTSFLA IVLVLIFFVT SSDSGSLVID SITAGGKVDV PVPQRIFWAA
IEGVIAAALL FGGGKDALGA LQAAAITVGL PFTVLLIVMC FGLFLGLKRE YKKLS
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