| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_1973 |
|---|
| Symbol | |
|---|
| ID | 3521592 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | - |
|---|
| Start bp | 2041734 |
|---|
| End bp | 2042978 |
|---|
| Gene Length | 1245 bp |
|---|
| Protein Length | 414 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 637284435 |
|---|
| Product | NupC family nucleoside transporter |
|---|
| Protein accession | YP_268703 |
|---|
| Protein GI | 71281122 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG1972] Nucleoside permease |
|---|
| TIGRFAM ID | [TIGR00804] nucleoside transporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.826575 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAATTAG GTGCTCTAAG AGGTGTGCTA GGAATTTTCG TTTTGTTAGC TATCGCCTAC
GCGTTATCAA GTGGAAAAAA ATCAATAAAT ATTCGCACAG TCGGTTTAGC TTTTGCACTA
CAAGTGCTGC TTGGCGCTTT TGTGTTATAT GTTCCCTTTG GTAAAGATGT TTTGCTGTCT
ATGACTAATG GCGTGCAAAG TGTTATTGAT AGTGCAAAAG TAGGCATTAA CTTTCTTTTT
GGTGGTTTAG GTACCGATGC TATGTTTGAC AATGGTGTAG GTTTTGTCTT TGCCATCAGA
GTATTGCCTA ATATTATTTT CTTTTCGTCT TTAATTGCTG TGCTTTATTA CCTTGGCATA
ATGCAATGGG TAATTAAAAT CATCGGCGGC GCATTACAAA AGCTTTTAAA GACAAGCAAA
CCTGAGTCAC TTTCAGCTAC GGCCAACATA TTTGTCGGTC AAACCGAAGC CCCTCTTATT
ATTCGTCCCT ATATTGCAAA AATGACCCAA TCAGAGCTAT TTGCCATCAT GGTTGGTGGC
CTAGCATCCG TTGCAGGTTC TATTTTAGCA GGATACGCTG GCCTAGGTAT TGAACTAAAA
TATCTAATTG CCGCTTCATT TATGGCCGCC CCAGGTGGAC TATTAATGGC TAAAATCATT
TGCCCTGAAA CTGAACACGA TAAAATAGTT ACCGAGTCTG TCGATTATGA TGACGAAAAT
GAAAAACCAA CAAATGTAAT TGATGCCGCC GCTTCTGGTG CAGCGTCAGG TCTTAAATTG
GCAGTAAATG TCGGTGCAAT GTTACTTGCC TTCATTGCCT TAATAGCATT GTTAAATTCG
CTAATTGGCG GTGTTTTTGG CTTATTCGGT TATGAAGATA TCACCATAGA ATTTTTCTTG
GGTTACCTTT TTGCACCGTT TGCTTATGTT ATTGGTGTTC CGGTCAATGA AATGCTGCAA
GCAGGTAGTT TTATTGGGCA AAAAGTTGTC GTCAATGAAT TCTTTGCCTA TGTTAATTTT
GTTGAAATCA AAGATACCTT AAGCCCTGCA ACTCAAGCCA TTGTGACTTT CGCATTATGT
GGTTTTGCTA ATTTATCATC AATAGCCATT TTACTTGGTG GCATTGGTTC GATGGCGCCG
AGCCGTCGAC ATGACATTGC CAGATTAGGC ATGCGAGCCA TGATTGCAGC TACTTTAGCC
AATCTAATGA GCGCAGCAAT TGCTGGTATA TTTATTTCCT TATAG
|
|---|
| Protein sequence | MELGALRGVL GIFVLLAIAY ALSSGKKSIN IRTVGLAFAL QVLLGAFVLY VPFGKDVLLS
MTNGVQSVID SAKVGINFLF GGLGTDAMFD NGVGFVFAIR VLPNIIFFSS LIAVLYYLGI
MQWVIKIIGG ALQKLLKTSK PESLSATANI FVGQTEAPLI IRPYIAKMTQ SELFAIMVGG
LASVAGSILA GYAGLGIELK YLIAASFMAA PGGLLMAKII CPETEHDKIV TESVDYDDEN
EKPTNVIDAA ASGAASGLKL AVNVGAMLLA FIALIALLNS LIGGVFGLFG YEDITIEFFL
GYLFAPFAYV IGVPVNEMLQ AGSFIGQKVV VNEFFAYVNF VEIKDTLSPA TQAIVTFALC
GFANLSSIAI LLGGIGSMAP SRRHDIARLG MRAMIAATLA NLMSAAIAGI FISL
|
|---|
| |