Gene CPS_1939 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCPS_1939 
Symbol 
ID3521415 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameColwellia psychrerythraea 34H 
KingdomBacteria 
Replicon accessionNC_003910 
Strand
Start bp1998726 
End bp2002712 
Gene Length3987 bp 
Protein Length1328 aa 
Translation table11 
GC content35% 
IMG OID637284401 
Productsensory box sensor histidine kinase/response regulator 
Protein accessionYP_268669 
Protein GI71280946 
COG category[T] Signal transduction mechanisms 
COG ID[COG0642] Signal transduction histidine kinase
[COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR02481] hemerythrin-like metal-binding domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.282055 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTTGCAA GTATATTTAG CCTCGCTGTA CTCGGGGGGA TTTCATATTT ACCTTTATTT 
GAATTCTTCT TAAGTATTGA TGAAGGCTTT ATTCCAATGG CCCCGTCAAC TTCTGCTTTA
CTTTTAGTGA CTTTTTTAGC TTTGTTTATT TGGGTTAACT GTACTCGTCA ATTTTATCGT
TATAAAAAGT CTATTGGCTT AATGTTATTA ATAGTTTCGC TCTTTGGGCT GTTAGAAATT
GTTGAATATT TCACTGGCGT TGAGCTTAAT TTTGAGAGTT ATATAGTGCC GAATTATGGC
GATTTAAATG GTGTTCCCAT CGCCAGAATG TCTCCAGTAA CAGGGCTGTG CTTTTTTCTC
ACCAGTTGTG TTTTATTCAT ACTATTAAAT CACAATAAAA AGAGTGACGT CAGCCATTTT
ATTGGTCTAA TAAAAAATTC TTTCACAACA ATACTATCGT TAATTTCCTT ATTATTTATA
GTTACTTACC TTTATCGTTC ACCTATTTTT TATAATACAC AAGATATAAT ACCTATGGCT
TTATCCACCA GTTTAGGTTT TTTATCTGTG TCTGGAGTAC TCATAGTAAA TGATAATAAA
AATTATTTTA TGAAAACATT TACTCACTTG TCACCCTCTA CCGCTTTGAT TCGTTTTATT
ACTCCTTTTA CGGTATTCAG TGTTTTTATA ACAGGACTCG TTCAGCACTT TATGTTTGCA
GTCAGTTCAG TAAATAATTC TATTTTTTTA TCGACGACCA TTCTTATATT ATTTGCGGTA
ATTTGTGGTT TTATAGCCAT GCTGGTCACT AAAAAATTGA TGTCTTTTCA AGATGAAAGT
AATAAAAATC TACATCAATA TAAATCTATG GTGACTTTAT CTTCAGGCAT GCAAGCGTTG
CTTGATGATA AATTTGTTTA TTTAGCGGTG AACCAAGCTT ATGCAGAAAA ACTTAATTTA
ACCATTGATC AGGTTATAGG TAAGCATCCT CGTGATATTT ATAGTAAAGG TTATTTTGAG
TCAGAGCTTA AAATTTACAG TGAGCGTTGT TTAGCAGGAG AAATTATTAA GTTAGAAAAG
TGGATGAGAT CCTCTTCGGG TCAGGCATGG TTTATCGATA TAGAAATGTC GCCCTATTAT
CAAAATGACG GTAATATTTA TGGTGTTATG GTAAATGCGC GTGATATTAC CGAACTAAAG
CACTATCAAG ACAACCTCGA GAAATCAAAG CTTGTTATTG AAAATAGTAG AGTTATTGCT
TTTCGCTGGA AGCCCGACTG CTCAGTAGAA CATGTATCAA GCAATGTTGA TTTATTGGGG
GTTAAGGCAA GTGATTTACT CTCGGGGAAA ACTAAATATA CCGATATGGT GCATCCGCAA
GATTTAGCTC GTGTGATGCA AGAAGTTAGG TCTTTTACTG AAAAAGGTGT AAAACAATTT
ATTCATGAAT ACCGTATTGT TTCTCCTTCA GGAGCAATGT ATTGGGTTGA AGATAGAACA
ACCATTGAAC GAGGTGAAGA TAATAACGTT GCTTTTTATC AAGGTATTGT TATTGATATA
ACAGAAAAAA AACAAGTAGA ACTTAAATTA AAGCAATCTA ATGCAATCAT ACAAAATGTT
ATTAATTCAA CACCAGATTT AATTTTTGCT AAGAATACAG AACATCAATA TATATTAGCG
AATAATGCTT TTGCCCACTC TTTAAAGCAA TCATCGCAGT CATTAATTGG AAAAACGGAT
CAACAGTTTA ATTATACCGA CGAGCAAATA AATAACTTCA AAATGCAAGA TGAGAAAGTC
TTGCATGGGA GCTGTGTTAT TACGCCAAGC CGTCGACCGC TTGATGGCAA TAAAGTACTT
GAGACCTCAA AGTTTCCCTT AAGAAATGAA AATGGTGATA TTGGTGGAGT GATAGGGATT
GGTCATGATG TGACTGAACA TATTGCTAAT CTTGCTAAAA TATCTAAACA ACAAAAGGAG
TTATCGCAAA CACTTGACGC TATATTTGAT GCGGTTATTA CCATTGATGA ATCAGGTTTA
ATACTAAGTT GTAATAGGGC GACAGAACTC ATGTTTGGTT ATGCAGCAGA GGAATTAGTT
GGCAACAATG TTAGTTTACT TATGCCTGAA AAGTTAGCTG CCCAACATGA TGAATACATT
AATAATTACT TGTTAACCGG TGAAAATAAA ATAATAGGAA GAGGTCGAGA GCTTGTAGGT
AAAAATAAAG ATCAGAAGGC ATTTCCTTTA CATTTAACCA TTGCTGAGCT CCCTAAAAAT
AAAGATGAGC GAAAACGATT TGTCGGGGTT TGTCATGATT TATCAAAGAC GAAACAGCAT
GAAAAACTGC TAAATAGAAC TCAAAAGATG GAAGCGCTTG GGCAACTTAC CGGTGGTATT
GCTCATGATT ATAACAATAT GCTCGGCGTT ATTATTGGCT ATAGTGATAT TTTAAAAACC
CAGCTAAAAG ATCAACCTGG ATTGCTTAAT TTTGTTGAAC AAATCCATCA AGCGGGCGAT
AGAGGAGCCC AACTCACCCG TAAATTACTT TCTTTCTCTC GTCAAACACC TGATGCGAGT
CAAGAGTCAG ACATCAATCG GCTTATTAAA AATAATAAAG ACGTACTGCG CAAGACTCTA
TTGTCGGTTG ATTTAAGGCT CAACCTTGAT GATGCAATTC ACAAGATTAA TATTGATCGG
AACTCTTTTG AAGATGCACT ATTAAATATG GCAATTAATG CAATGCATGC CATGCCCCAT
GGTGGAGTAT TGAACTTATC CACTTGTGAA GTAGAGTTAT CAAAAGAACA AGCAGCTAAC
TTTAATATTG AACAGGGGAA GTACGTACAG TTATCGATTG AAGATAATGG TGAAGGGATG
AGTAAAGCGA TACAAGATAA AATTTTTGAA CCTTTCTTTT CTACCAAAGG AGATCAGGGC
TCAGGGCTTG GTCTTGCACA AGTCTATGGA TTCATTAAAT CCTCTATGGG CGCTATTAAT
GTGTATTCAG AGCTAGGATC AGGAACAAGG TTTTCACTTT ATTTACCCAT ACCTAAACAA
GATTATAAAG CAGAAAATAA AGTAGAAGAT AAAGAAGAGC AATCTAGTGT TTTTGGCAAT
GAAACCATTC TTGTTGTCGA CGATGAACCT CAACTTCGTG CTTTAGCTCA AACAATTTTA
GCCGCCAAAG GTTACCGAGT GTTAACCGCA ACAAATGGTA TAGAGGCGTT AGCTGTATTA
GAAGAAAATT CAATAGACTT GATGTTTTCA GACATTATTA TGCCTAAAAT GAACGGTTAT
ATTTTGGTTG AAAAAGCGCA AAAACTGTAT CCAGAATTGA AGATATTATT AGCGAGTGGC
TTTCAAGGTA ATCAAATTGA TAACAACATC ATTTTGGATG AACCTATCAT AGCTAAGCCT
TACGAGAACA AATGTTTACT TCGTATCATC AGGGAGTGCC TAGATAAACA AGATGCCAAG
ACTATTCAAG GGAGTAATCA AAATAACAAC CTAATCGTCC CCAAAAGCTC ACCAATAAAA
AGAATAATAT GGACGAATGA AATGAGCATT GATGATGGCG GCGAACTCGA TGAAGACCAT
AAGTTTATGT TTTCTTTACT CAATCGTTGT CAAGAATTGT TAGAAGAGCA AGATGATCAC
CAATCTGCAC AAGCAATTAT TACTGAGATA GTGCAATACA CTCAAGACCA TTTTGTTAAC
GAAGAATTAT TGATGAATAA CATCAACTAT CCCTATGCTA AAAATCATTG TGATGTTCAC
CGCATGATTG CTAAACAATT AAGCAAAAAG GTTTTGGTCT GTTCAGACAA AGAAATTCTA
AGGTGGCTAA TTACCGATAT GAGCACTTGG CTAGTTGAAC ATATCATGGA AATGGATAAA
CCTTTGCATA AGTATATTTT GAAACACAAA GAGCAAGTAG GCAGCGGTTT AAAAGGAAAT
ACCGAGGGTT ATATGTATGA TGAATAG
 
Protein sequence
MFASIFSLAV LGGISYLPLF EFFLSIDEGF IPMAPSTSAL LLVTFLALFI WVNCTRQFYR 
YKKSIGLMLL IVSLFGLLEI VEYFTGVELN FESYIVPNYG DLNGVPIARM SPVTGLCFFL
TSCVLFILLN HNKKSDVSHF IGLIKNSFTT ILSLISLLFI VTYLYRSPIF YNTQDIIPMA
LSTSLGFLSV SGVLIVNDNK NYFMKTFTHL SPSTALIRFI TPFTVFSVFI TGLVQHFMFA
VSSVNNSIFL STTILILFAV ICGFIAMLVT KKLMSFQDES NKNLHQYKSM VTLSSGMQAL
LDDKFVYLAV NQAYAEKLNL TIDQVIGKHP RDIYSKGYFE SELKIYSERC LAGEIIKLEK
WMRSSSGQAW FIDIEMSPYY QNDGNIYGVM VNARDITELK HYQDNLEKSK LVIENSRVIA
FRWKPDCSVE HVSSNVDLLG VKASDLLSGK TKYTDMVHPQ DLARVMQEVR SFTEKGVKQF
IHEYRIVSPS GAMYWVEDRT TIERGEDNNV AFYQGIVIDI TEKKQVELKL KQSNAIIQNV
INSTPDLIFA KNTEHQYILA NNAFAHSLKQ SSQSLIGKTD QQFNYTDEQI NNFKMQDEKV
LHGSCVITPS RRPLDGNKVL ETSKFPLRNE NGDIGGVIGI GHDVTEHIAN LAKISKQQKE
LSQTLDAIFD AVITIDESGL ILSCNRATEL MFGYAAEELV GNNVSLLMPE KLAAQHDEYI
NNYLLTGENK IIGRGRELVG KNKDQKAFPL HLTIAELPKN KDERKRFVGV CHDLSKTKQH
EKLLNRTQKM EALGQLTGGI AHDYNNMLGV IIGYSDILKT QLKDQPGLLN FVEQIHQAGD
RGAQLTRKLL SFSRQTPDAS QESDINRLIK NNKDVLRKTL LSVDLRLNLD DAIHKINIDR
NSFEDALLNM AINAMHAMPH GGVLNLSTCE VELSKEQAAN FNIEQGKYVQ LSIEDNGEGM
SKAIQDKIFE PFFSTKGDQG SGLGLAQVYG FIKSSMGAIN VYSELGSGTR FSLYLPIPKQ
DYKAENKVED KEEQSSVFGN ETILVVDDEP QLRALAQTIL AAKGYRVLTA TNGIEALAVL
EENSIDLMFS DIIMPKMNGY ILVEKAQKLY PELKILLASG FQGNQIDNNI ILDEPIIAKP
YENKCLLRII RECLDKQDAK TIQGSNQNNN LIVPKSSPIK RIIWTNEMSI DDGGELDEDH
KFMFSLLNRC QELLEEQDDH QSAQAIITEI VQYTQDHFVN EELLMNNINY PYAKNHCDVH
RMIAKQLSKK VLVCSDKEIL RWLITDMSTW LVEHIMEMDK PLHKYILKHK EQVGSGLKGN
TEGYMYDE