| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_1876 |
|---|
| Symbol | cydA |
|---|
| ID | 3520338 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | + |
|---|
| Start bp | 1932422 |
|---|
| End bp | 1934008 |
|---|
| Gene Length | 1587 bp |
|---|
| Protein Length | 528 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 637284338 |
|---|
| Product | cytochrome d ubiquinol oxidase, subunit I |
|---|
| Protein accession | YP_268606 |
|---|
| Protein GI | 71279876 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1271] Cytochrome bd-type quinol oxidase, subunit 1 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.0888533 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATAAGTG AAGCTTTAGT TGAATTATCG CGATGGCAGT TTGCTGTTAC CGCACTATTC
CATTTTTTGT TTGTTCCCTT AACCATCGGT TTAACATGGA TTTTATTTAT CATGGAAGCT
GTTTATGTCA TGACAGGGCG TGAAATTTAT CGCGATATGA CAAAGTTTTG GGGCAAGCTA
TTTGGTATCA ATTTTGCGAT TGGTGTGGCT ACCGGTCTAA CGATGGAGTT TGAGTTTGGT
ACTAATTGGT CATACTACTC TCATTATGTC GGCGATGTGT TCGGCGCACC GTTAGCAATT
GAAGGGCTAA TGGCCTTTTT TCTTGAATCT ACTTTTGTCG GAATGTTCTT TTTAGGTTGG
GATAGATTAA GTAAACGTCA GCATTTAATG GGCACATTTC TTATGGCGTT AGGTACCAAT
TTTTCTGCGT TATGGATTTT GATTGCCAAT GGTTGGATGC AAAACCCCGT GGGAAGTGAA
TTTAACTACA TGACAATGCG TATGGAGCTA GTGAGCTTTA GCGAAATTAT TTTCAATCCG
GTTGCTCAAG TTAAATTTAT TCACACTGTA GCGGGCGGCT ACGTTGCTGG TTCAATGTTT
GTGTTGAGCA TTAGCAGTTA TTACTTACTT AAAGGCAGAG ATATTGCGTT CGCAAAACGT
TCTTTTTCAG TTGCCGCAGG ATTTGGTCTA GCAGCGATAT TTTCCGTTAT TTTATTGGGT
GATGAATCAG GCTATGAGGT AGGTGAAGTA CAAAGAGTTA AACTTGCTGC TATTGAAGCG
GAATATCATA CCGAGCCAGC ACCTGCTGCA TTTACCTTAA TCGGCATACC AGATGATGAA
GCAATGGAAA CCCATTATGC AGTAAAAATC CCCTATGCGT TGGGCCTTAT TGCCACGCGC
TCTTTAGACG AAAAAGTGAC TGGTTTACGA GACTTACAAA AAGCGCATGA ACCGCGTATT
CGTAATGGCA TGATCGCTTA CAAGTACTTA GTTAAGCTAC GTAATGGTGA AGACACGCCT
GAAAACCTTG CTAAATTTAA TGAAACTAAA CATGACCTTG GCTACGGTTT ACTACTTAAG
CGTTATACCG ATAAGGTAGT CGATGCGACC GAAGCACAAA TACAAATGGC TGTTAAAGAT
TCTACGCCAC CGGTAGCGCC TGTTTTTTGG GCATTTCGCA TGATGGTTGC TTCCGGCTTT
ATTATGTTAC TGCTATTTTG TTTAGCATTT TATTTTAATG CGCGACGTCA AATCGAACAA
AAACGTTGGT TACTAAAATC AATACTTTAT GCATTACCGC TACCCTGGAT AGCGATAGAA
ACGGGTTGGT TTGTTGCTGA ATTTGGACGT CAGCCTTGGG CAATTAGTGA AATTTTACCG
ACCTTCTTAT CTACTTCATC GTTAGCGGCA AGCGATGTGC TGTTTTCTCT CATTGCCTTC
ATTGTTGTTT ACAGCATTTT ATTTGTTATC GAAATGTACT TGATGATTAA GTTTGCGCGT
TTGGGTCCCA GTGCTTTACA CACTGGACGT TATCATTTTG AACAAGCACC AGAGTTAACG
TCTGGTCTTC GCAGCCAGAA TTCTTAA
|
|---|
| Protein sequence | MISEALVELS RWQFAVTALF HFLFVPLTIG LTWILFIMEA VYVMTGREIY RDMTKFWGKL
FGINFAIGVA TGLTMEFEFG TNWSYYSHYV GDVFGAPLAI EGLMAFFLES TFVGMFFLGW
DRLSKRQHLM GTFLMALGTN FSALWILIAN GWMQNPVGSE FNYMTMRMEL VSFSEIIFNP
VAQVKFIHTV AGGYVAGSMF VLSISSYYLL KGRDIAFAKR SFSVAAGFGL AAIFSVILLG
DESGYEVGEV QRVKLAAIEA EYHTEPAPAA FTLIGIPDDE AMETHYAVKI PYALGLIATR
SLDEKVTGLR DLQKAHEPRI RNGMIAYKYL VKLRNGEDTP ENLAKFNETK HDLGYGLLLK
RYTDKVVDAT EAQIQMAVKD STPPVAPVFW AFRMMVASGF IMLLLFCLAF YFNARRQIEQ
KRWLLKSILY ALPLPWIAIE TGWFVAEFGR QPWAISEILP TFLSTSSLAA SDVLFSLIAF
IVVYSILFVI EMYLMIKFAR LGPSALHTGR YHFEQAPELT SGLRSQNS
|
|---|
| |