| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_1733 |
|---|
| Symbol | |
|---|
| ID | 3522403 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Colwellia psychrerythraea 34H |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003910 |
|---|
| Strand | + |
|---|
| Start bp | 1782035 |
|---|
| End bp | 1782826 |
|---|
| Gene Length | 792 bp |
|---|
| Protein Length | 263 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 637284196 |
|---|
| Product | TPR domain-containing protein |
|---|
| Protein accession | YP_268471 |
|---|
| Protein GI | 71281931 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1729] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR02795] tol-pal system protein YbgF |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.402225 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAACTGA ATAAAGTTTT ATTTGGCATG ATGTTTACAG CTAGCGCCGT TAGTGCGTTA
GCTGTAGCTC AAGCGCCAGT CATTGATGTT AACGCCAATT CTATCGACTC TTCCGCGTTA
ACAGAGCAAT TAACAACCTT GTCACGTAAG TTAGACTCAC GTAATAAGGC ACAAGTGAAT
ATACAACGTC AGTTGGATCT TTTACAAAAT GAAGTGAATG AACTTCGTGG CGTGACTGAA
TTGCATACCC ACAAATTAAG TCAAGTATTA GAGCGTCAAC GAGAGCTGTA TAAAGAAATT
GATAGACGAG TTAATGAAGT ACTTAAATCA ACAAGTAAAA CTGCTTCAGT TACTATGAGC
CCAGTTGCGA CGATTAGCAC CGCAGGCAAT GCCACTAGTT ACAGTAATAA CTTAACTGAA
AATGAAACTT ATGACCATGC ACTTAATCTC GTTTTAAAAG ATAAACGTTA CCAGCAAGCT
ATTGTTGAAT TTAGAGCCTT TAATAAAAGC TTTCCAAATT CAAGCTATGC ACCTAACGCC
CATTATTGGT TAGGCCAATT ACTCTTTAAT CAAGGCGAAC TTGCACAAGC TGAACAAGAG
TTCTTAATTG TTGTTAACAA ACATAAAGAC TCAACTAAGC GTCCTGATGC ACTATTAAAG
CTTGCTATGG TTGCTCAAAA GCAAAATAAT GCTAAAAAAG CGATTTCAAC CTATCAACAG
TTGATAAAAG AGTACCCAGA ATCAACAGCG GCAAAACTTG GCAAGCCACG TTTAGCCAGT
TTAACTAAGT AA
|
|---|
| Protein sequence | MKLNKVLFGM MFTASAVSAL AVAQAPVIDV NANSIDSSAL TEQLTTLSRK LDSRNKAQVN
IQRQLDLLQN EVNELRGVTE LHTHKLSQVL ERQRELYKEI DRRVNEVLKS TSKTASVTMS
PVATISTAGN ATSYSNNLTE NETYDHALNL VLKDKRYQQA IVEFRAFNKS FPNSSYAPNA
HYWLGQLLFN QGELAQAEQE FLIVVNKHKD STKRPDALLK LAMVAQKQNN AKKAISTYQQ
LIKEYPESTA AKLGKPRLAS LTK
|
|---|
| |