| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | CPS_1560 |
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| Symbol | ecfE |
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| ID | 3522601 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Colwellia psychrerythraea 34H |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003910 |
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| Strand | + |
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| Start bp | 1603741 |
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| End bp | 1605099 |
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| Gene Length | 1359 bp |
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| Protein Length | 452 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 637284023 |
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| Product | membrane-associated zinc metalloprotease EcfE |
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| Protein accession | YP_268302 |
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| Protein GI | 71282128 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0750] Predicted membrane-associated Zn-dependent proteases 1 |
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| TIGRFAM ID | [TIGR00054] RIP metalloprotease RseP |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.294155 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGATGGACT TTTTGTGGAA CCTAGCATCT TTTGTTATCG CCTTAGGTAT CCTAGTTACA
GTACATGAAT ATGGTCACTT TTGGGTCGCT AGAAAAAACG GCGTAAAAGT TGAGCGATTT
TCTGTCGGTT TTGGTCGAGC TCTTTGGCGA AAAACAGGAA AAGATGGCAC TGAATATGTT
TTGGCGATGA TACCTCTGGG TGGTTATGTC AAAATGTTAG ATGAGCGTAT TGATGATGTT
AAGCCTGAAG ATAAAGATAA AACTTTTAAT TCTAAAACAG TTTACCAGCG TATAGCGATT
GTCGCAGCAG GACCTTTAGC TAACTTTATT TTTGCTTTAT TTGCTTTGTA TATAATGTTC
CTTATTGGTG TTCCAAGTGT AAAACCAATG ATCGGAAATA TTAGTCCAAG CTCAATTGCA
GCGGAAGCTA ATCTAACAAA AGATAGTGAG ATTGTTAGTA TCGCAGGCGA TAAAACACGT
AATTGGCAAG AAGTTAACCT TGCGCTAATA GGACAAATTG GTAATCAAGA AATAACCATT
AAAACTAAAA ATAGTGATAG CCAGTATATA TCTAGCTTTA CTTTAGACAC CAGTAATTGG
GAATTCTCAC CGGATAAAAC GTCGGCTTTA ACTAGCTTAG GTATTTCGCC TTATAGACCT
AAAGTACACA ATGAATTGGC GGCTGTGGCA GAAAAAAGCC CTGCTGAGTT AGGCGGACTT
TTAGTGGGTG ACAAGCTCAT CGCTGTTAAT GATGTCTTAA CGGACGATTG GGTAGCTTTT
GCAAAAGAGA TAAAACAGTA TCCGGGTAAA GAAGTATCAA TCACTATTAA GCGTAATGAT
GAAATACTAA CCCCCCTAGT GATACCAAAC AGTATTGAAC AAGCAGGAAA GGTTATTGGA
TATATTGGTG TTGCCCCTAA AGTTGATGCA TGGCCAAAAT CGTTATTAGT TGAATTAAGT
TACGGACCAA TTGATTCTCT CCAAGAAAGC GCACAGCGTA CTTGGAATTT GACAAGTTTA
ACATTTAGTA TGATAGGGAA ACTTATTACT GGCGATGTAT CGGTAAAAAA CCTAAGCGGT
CCTATCGGTA TTGCTCAAGG TGCAGGTAAT AGTGCAAGTC ATGGTTTTGT ATACTTTCTA
GGCTTTTTAG CGTTAATTAG TATTAATTTG GGAATAATTA ACCTTTTACC GCTTCCAGTA
CTTGATGGTG GACACTTACT CTATTATCTT ATAGAGCTTT TTACAGGTAA AGAAGTGCCA
GAGAAAACGC AAGAGGCAGG ATTTAAGTTT GGTGCCTTAG CATTATTGAT GTTGATGGCT
ATTGGCTTAT TTAATGATTT TAGTCGGGTT CTTGGGTAA
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| Protein sequence | MMDFLWNLAS FVIALGILVT VHEYGHFWVA RKNGVKVERF SVGFGRALWR KTGKDGTEYV
LAMIPLGGYV KMLDERIDDV KPEDKDKTFN SKTVYQRIAI VAAGPLANFI FALFALYIMF
LIGVPSVKPM IGNISPSSIA AEANLTKDSE IVSIAGDKTR NWQEVNLALI GQIGNQEITI
KTKNSDSQYI SSFTLDTSNW EFSPDKTSAL TSLGISPYRP KVHNELAAVA EKSPAELGGL
LVGDKLIAVN DVLTDDWVAF AKEIKQYPGK EVSITIKRND EILTPLVIPN SIEQAGKVIG
YIGVAPKVDA WPKSLLVELS YGPIDSLQES AQRTWNLTSL TFSMIGKLIT GDVSVKNLSG
PIGIAQGAGN SASHGFVYFL GFLALISINL GIINLLPLPV LDGGHLLYYL IELFTGKEVP
EKTQEAGFKF GALALLMLMA IGLFNDFSRV LG
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